[ 原始碼： trnascan-se ]
套件：trnascan-se（2.0.0-3） [non-free]
detection of transfer RNA genes in genomic sequence
tRNAscan-SE identifies 99-100% of transfer RNA genes in DNA sequence while giving less than one false positive per 15 gigabases. Two previously described tRNA detection programs are used as fast, first-pass prefilters to identify candidate tRNAs, which are then analyzed by a highly selective tRNA covariance model. This work represents a practical application of RNA covariance models, which are general, probabilistic secondary structure profiles based on stochastic context-free grammars. tRNAscan-SE searches at ~ 30 000 bp/s. Additional extensions to tRNAscan-SE detect unusual tRNA homologues such as selenocysteine tRNAs, tRNA-derived repetitive elements and tRNA pseudogenes.
其他與 trnascan-se 有關的套件
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- dep: infernal
- inference of RNA secondary structural alignments
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- dep: libc6 (>= 2.14)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: perl
- Larry Wall's Practical Extraction and Report Language
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- dep: trnascan-se-common (= 2.0.0-3)
- detection of transfer RNA genes in genomic sequence (common files)