[ 原始碼： maffilter ]
套件：maffilter（1.3.1+dfsg-1 以及其他的）
maffilter 的相關連結
Debian 的資源：
下載原始碼套件 maffilter：
- [maffilter_1.3.1+dfsg-1.dsc]
- [maffilter_1.3.1+dfsg.orig.tar.xz]
- [maffilter_1.3.1+dfsg-1.debian.tar.xz]
維護小組：
外部的資源：
- 主頁 [jydu.github.io]
相似套件：
process genome alignment in the Multiple Alignment Format
MafFilter applies a series of "filters" to a MAF file, in order to clean it, extract data and computer statistics while keeping track of the associated meta-data such as genome coordinates and quality scores.
* It can process the alignment to remove low-quality / ambiguous / masked regions. * It can export data into a single or multiple alignment file in format such as Fasta or Clustal. * It can read annotation data in GFF or GTF format, and extract the corresponding alignment. * It can perform sliding windows calculations. * It can reconstruct phylogeny/genealogy along the genome alignment. * It can compute population genetics statistics, such as site frequency spectrum, number of fixed/polymorphic sites, etc.
其他與 maffilter 有關的套件
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- dep: libboost-iostreams1.67.0
- Boost.Iostreams Library
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- dep: libboost-regex1.67.0 (>= 1.67.0-10)
- regular expression library for C++
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- dep: libbpp-core4 [除 amd64]
- Bio++ Core library
- dep: libbpp-core4 (>= 2.4.1) [amd64]
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- dep: libbpp-phyl-omics3 (>= 2.4.1)
- Bio++ Phylogenetics library: genomics components
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- dep: libbpp-phyl12 [除 amd64]
- Bio++ Phylogenetic library
- dep: libbpp-phyl12 (>= 2.4.1) [amd64]
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- dep: libbpp-seq-omics3 [除 amd64]
- Bio++ Sequence library: genomics components
- dep: libbpp-seq-omics3 (>= 2.4.1) [amd64]
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- dep: libbpp-seq12 [除 amd64]
- Bio++ Sequence library
- dep: libbpp-seq12 (>= 2.4.1) [amd64]
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- dep: libbz2-1.0
- high-quality block-sorting file compressor library - runtime
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- dep: libc6 (>= 2.1.3) [i386]
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
- dep: libc6 (>= 2.14) [amd64]
- dep: libc6 (>= 2.17) [arm64]
- dep: libc6 (>= 2.4) [armhf]
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- dep: libgcc1 (>= 1:3.0) [除 armhf]
- GCC 支援函式庫
- dep: libgcc1 (>= 1:3.5) [armhf]
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
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- dep: zlib1g (>= 1:1.1.4)
- 壓縮函式庫 - 跑程式時用(runtime)
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- sug: maffilter-examples
- process genome alignment in the Multiple Alignment Format (example data)