[ buster ]
[ 原始碼： pbalign ]
套件：pbalign（0.3.2-1）
map Pacific Biosciences reads to reference DNA sequences
pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) format.
This package is part of the SMRTAnalysis suite.
其他與 pbalign 有關的套件
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- dep: blasr (>= 5.3+0)
- mapping single-molecule sequencing reads
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- dep: python
- interactive high-level object-oriented language (Python2 version)
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- dep: python-pbalign (= 0.3.2-1)
- map Pacific Biosciences reads to reference DNA sequences (Python2)
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- dep: python-pkg-resources
- Package Discovery and Resource Access using pkg_resources
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- rec: hdf5-tools
- Hierarchical Data Format 5 (HDF5) - Runtime tools
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- rec: python-pbh5tools
- tools for manipulating Pacific Biosciences HDF5 files -- Python 2 library
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- sug: bowtie2
- ultrafast memory-efficient short read aligner
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- sug: gmap
- spliced and SNP-tolerant alignment for mRNA and short reads
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- sug: pbalign-doc
- documentation for pbalign