[ 原始碼： prime-phylo ]
套件：prime-phylo（1.0.11-7 以及其他的）
bayesian estimation of gene trees taking the species tree into account
PrIME (Probabilistic Integrated Models of Evolution) is a package supporting inference of evolutionary parameters in a Bayesian framework using Markov chain Monte Carlo simulation. A distinguishing feature of PrIME is that the species tree is taken into account when analyzing gene trees.
The input data to PrIME is a multiple sequence alignment in FASTA format and the output data contains trees in Newick format.
其他與 prime-phylo 有關的套件
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- dep: libblas3
- Basic Linear Algebra Reference implementations, shared library
- 或者 libblas.so.3
- 本虛擬套件由這些套件填實： libatlas3-base, libblas3, libblis2-openmp, libblis2-pthread, libblis2-serial, libopenblas-base
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- dep: libboost-mpi1.67.0
- C++ interface to the Message Passing Interface (MPI)
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- dep: libboost-serialization1.67.0
- serialization library for C++
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- dep: libc6 (>= 2.23)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: libgcc1 (>= 1:3.0)
- GCC 支援函式庫
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- dep: liblapack3
- Library of linear algebra routines 3 - shared version
- 或者 liblapack.so.3
- 本虛擬套件由這些套件填實： libatlas3-base, liblapack3, libopenblas-base
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- dep: libopenmpi3
- high performance message passing library -- shared library
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
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- dep: libxml2 (>= 2.7.4)
- GNOME XML library
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- dep: perl
- Larry Wall's Practical Extraction and Report Language
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- sug: mafft
- Multiple alignment program for amino acid or nucleotide sequences
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- sug: mrbayes
- Bayesian Inference of Phylogeny
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- sug: muscle
- Multiple alignment program of protein sequences
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- sug: njplot
- phylogenetic tree drawing program
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- sug: phyml
- Phylogenetic estimation using Maximum Likelihood
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- sug: probalign
- multiple sequence alignment using partition function posterior probabilities
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- sug: python-biopython
- Python library for bioinformatics (implemented in Python 2)
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- sug: raxml
- Randomized Axelerated Maximum Likelihood of phylogenetic trees
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- sug: treeviewx
- Displays and prints phylogenetic trees