套件：python-cogent（1.9-14）

[ 原始碼： python-cogent  ]

framework for genomic biology

PyCogent is a software library for genomic biology. It is a fully integrated and thoroughly tested framework for:

 * controlling third-party applications,
 * devising workflows; querying databases,
 * conducting novel probabilistic analyses of biological sequence
   evolution, and
 * generating publication quality graphics.

It is distinguished by many unique built-in capabilities (such as true codon alignment) and the frequent addition of entirely new methods for the analysis of genomic data.

標籤: 生物學: 蛋白質, 軟體開發: Python 開發, 函式庫, 領域: field::biology, field::biology:bioinformatics, 實做語言: implemented-in::python, interface::commandline, 角色: 開發用函式庫, 程式, Purpose: use::analysing, use::comparing

其他與 python-cogent 有關的套件

• dep: libc6 (>= 2.4)

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

• dep: python

  interactive high-level object-oriented language (Python2 version)

  dep: python (<< 2.8)

  dep: python (>= 2.7~)

• dep: python-matplotlib

  Python based plotting system in a style similar to Matlab

• dep: python-numpy (>= 1:1.16.0~rc1)

  Numerical Python adds a fast array facility to the Python language

• dep: python-numpy-abi9

  本虛擬套件由這些套件填實： python-numpy

• rec: blast2

  transitional dummy package to ncbi-blast+-legacy

• rec: cd-hit

  suite of programs designed to quickly group sequences

• rec: clearcut

  extremely efficient phylogenetic tree reconstruction

• rec: dialign

  Segment-based multiple sequence alignment

• rec: muscle

  Multiple alignment program of protein sequences

• sug: cdbfasta

  Constant DataBase indexing and retrieval tools for multi-FASTA files

• sug: clustalw

  global multiple nucleotide or peptide sequence alignment

• sug: fasttree

  phylogenetic trees from alignments of nucleotide or protein sequences

• sug: mafft

  Multiple alignment program for amino acid or nucleotide sequences

• sug: mothur

  sequence analysis suite for research on microbiota

• sug: parsinsert

  Parsimonious Insertion of unclassified sequences into phylogenetic trees

• sug: python-cogent-doc

  docs for python-cogent

• sug: rdp-classifier

  extensible sequence classifier for fungal lsu, bacterial and archaeal 16s

• sug: rtax

  Classification of sequence reads of 16S ribosomal RNA gene

下載 python-cogent

下載可用於所有硬體架構的

硬體架構	套件大小	安裝後大小	檔案
armhf	2，383。5 kB	7，349。0 kB	[檔案列表]