[ 原始碼： sga ]
套件：sga（0.10.15-4）
de novo genome assembler that uses string graphs
The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads.
SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.
其他與 sga 有關的套件
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- dep: libbamtools2.5.1
- dynamic library for manipulating BAM (genome alignment) files
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- dep: libc6 (>= 2.23)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: libgcc1 (>= 1:3.0)
- GCC 支援函式庫
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- dep: libgomp1 (>= 4.9)
- GCC OpenMP (GOMP) support library
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
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- dep: python
- interactive high-level object-oriented language (Python2 version)
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- dep: python-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 2)
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- dep: python-ruffus
- Python computation pipeline library widely used in bioinformatics
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- dep: zlib1g (>= 1:1.1.4)
- 壓縮函式庫 - 跑程式時用(runtime)
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- rec: abyss (>= 2.0.2-1)
- de novo, parallel, sequence assembler for short reads