套件：wtdbg2（2.5-7 以及其他的）

[ 原始碼： wtdbg2  ]

de novo sequence assembler for long noisy reads

Wtdbg2 is a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads without error correction and then builds the consensus from intermediate assembly output. Wtdbg2 is able to assemble the human and even the 32Gb Axolotl genome at a speed tens of times faster than CANU and FALCON while producing contigs of comparable base accuracy.

During assembly, wtdbg2 chops reads into 1024bp segments, merges similar segments into a vertex and connects vertices based on the segment adjacency on reads. The resulting graph is called fuzzy Bruijn graph (FBG). It is akin to De Bruijn graph but permits mismatches/gaps and keeps read paths when collapsing k-mers. The use of FBG distinguishes wtdbg2 from the majority of long-read assemblers.

其他與 wtdbg2 有關的套件

• dep: libc6 (>= 2.29)

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

• dep: zlib1g (>= 1:1.2.0)

  壓縮函式庫 - 跑程式時用(runtime)

• sug: minimap2

  versatile pairwise aligner for genomic and spliced nucleotide sequences

• sug: mummer

  Efficient sequence alignment of full genomes

• sug: perl

  Larry Wall's Practical Extraction and Report Language

• sug: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• sug: wtdbg2-examples

  Examples for wtdbg - de novo sequence assembler

下載 wtdbg2

下載可用於所有硬體架構的

硬體架構	版本	套件大小	安裝後大小	檔案
amd64	2.5-7+b1	678。4 kB	6，643。0 kB	[檔案列表]
arm64	2.5-7+b1	328。2 kB	1，014。0 kB	[檔案列表]
armel	2.5-7+b1	345。5 kB	1，184。0 kB	[檔案列表]
armhf	2.5-7+b1	355。8 kB	872。0 kB	[檔案列表]
i386	2.5-7+b1	866。7 kB	5，501。0 kB	[檔案列表]
mips64el	2.5-7+b1	345。5 kB	1，282。0 kB	[檔案列表]
mipsel	2.5-7+b1	387。9 kB	1，384。0 kB	[檔案列表]
ppc64el	2.5-7+b1	364。4 kB	1，366。0 kB	[檔案列表]
s390x	2.5-7+b1	335。9 kB	1，302。0 kB	[檔案列表]