套件：prank（0.0.170427+dfsg-3）

[ 原始碼： prank  ]

Probabilistic Alignment Kit for DNA, codon and amino-acid sequences

PRANK is a probabilistic multiple alignment program for DNA, codon and amino-acid sequences. It's based on a novel algorithm that treats insertions correctly and avoids over-estimation of the number of deletion events. In addition, PRANK borrows ideas from maximum likelihood methods used in phylogenetics and correctly takes into account the evolutionary distances between sequences. Lastly, PRANK allows for defining a potential structure for sequences to be aligned and then, simultaneously with the alignment, predicts the locations of structural units in the sequences.

PRANK is a command-line program for UNIX-style environments but the same sequence alignment engine is implemented in the graphical program PRANKSTER. In addition to providing a user-friendly interface to those not familiar with Unix systems, PRANKSTER is an alignment browser for alignments saved in the HSAML format. The novel format allows for storing all the information generated by the aligner and the alignment browser is a convenient way to analyse and manipulate the data.

PRANK aims at an evolutionarily correct sequence alignment and often the result looks different from ones generated with other alignment methods. There are, however, cases where the different look is caused by violations of the method's assumptions. To understand why things may go wrong and how to avoid that, read this explanation of differences between PRANK and traditional progressive alignment methods.

其他與 prank 有關的套件

• dep: libc6 (>= 2.29)

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

• dep: libgcc-s1 (>= 3.0) [除 armel, armhf]

  GCC 支援函式庫

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libstdc++6 (>= 5.2) [armel, armhf]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 9) [除 armel, armhf]

• enh: t-coffee

  Multiple Sequence Alignment

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硬體架構	套件大小	安裝後大小	檔案
amd64	386。0 kB	1，180。0 kB	[檔案列表]
arm64	318。8 kB	1，044。0 kB	[檔案列表]
armel	328。1 kB	1，091。0 kB	[檔案列表]
armhf	333。8 kB	779。0 kB	[檔案列表]
i386	395。6 kB	1，303。0 kB	[檔案列表]
mips64el	309。6 kB	1，335。0 kB	[檔案列表]
mipsel	315。6 kB	1，380。0 kB	[檔案列表]
ppc64el	349。3 kB	1，320。0 kB	[檔案列表]
s390x	336。6 kB	1，188。0 kB	[檔案列表]