[ 原始碼： hinge ]
套件：hinge（0.5.0-6 以及其他的）
long read genome assembler based on hinging
HINGE is a genome assembler that seeks to achieve optimal repeat resolution by distinguishing repeats that can be resolved given the data from those that cannot. This is accomplished by adding “hinges” to reads for constructing an overlap graph where only unresolvable repeats are merged. As a result, HINGE combines the error resilience of overlap-based assemblers with repeat-resolution capabilities of de Bruijn graph assemblers.
其他與 hinge 有關的套件
|
|
|
|
-
- dep: daligner
- local alignment discovery between long nucleotide sequencing reads
-
- dep: dascrubber
- alignment-based scrubbing pipeline for DNA sequencing reads
-
- dep: dazzdb
- manage nucleotide sequencing read data
-
- dep: libc6 (>= 2.27)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
-
- dep: libfmt7 (>= 7.1.3+ds1)
- fast type-safe C++ formatting library -- library
-
- dep: libgcc-s1 (>= 4.2)
- GCC 支援函式庫
-
- dep: libgomp1 (>= 4.2.1)
- GCC OpenMP (GOMP) support library
-
- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
-
- dep: python3-colormap
- ease manipulation of matplotlib colormaps and color codecs (Python 3)
-
- dep: python3-matplotlib
- Python based plotting system in a style similar to Matlab (Python 3)
-
- dep: python3-networkx
- tool to create, manipulate and study complex networks (Python3)
-
- dep: python3-numpy
- Fast array facility to the Python 3 language
-
- dep: python3-pbcore
- Python 3 library for processing PacBio data files
-
- dep: python3-ujson
- ultra fast JSON encoder and decoder for Python 3
-
- dep: zlib1g (>= 1:1.1.4)
- 壓縮函式庫 - 跑程式時用(runtime)