套件：last-align（1179-1 以及其他的）

[ 原始碼： last-align  ]

genome-scale comparison of biological sequences

LAST is software for comparing and aligning sequences, typically DNA or protein sequences. LAST is similar to BLAST, but it copes better with very large amounts of sequence data. Here are two things LAST is good at:

 * Comparing large (e.g. mammalian) genomes.
 * Mapping lots of sequence tags onto a genome.

The main technical innovation is that LAST finds initial matches based on their multiplicity, instead of using a fixed size (e.g. BLAST uses 10-mers). This allows one to map tags to genomes without repeat-masking, without becoming overwhelmed by repetitive hits. To find these variable-sized matches, it uses a suffix array (inspired by Vmatch). To achieve high sensitivity, it uses a discontiguous suffix array, analogous to spaced seeds.

標籤: 生物學: 核酸, 領域: 生物學, field::biology:bioinformatics, implemented-in::c++, 角色: 程式

其他與 last-align 有關的套件

• dep: libc6 (>= 2.29)

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

• dep: libgcc-s1 (>= 3.0) [除 armel, armhf, i386, mipsel]

  GCC 支援函式庫

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, mipsel]

• dep: libstdc++6 (>= 6)

  GNU Standard C++ Library v3

• dep: zlib1g (>= 1:1.1.4)

  壓縮函式庫 - 跑程式時用(runtime)

• rec: parallel

  build and execute command lines from standard input in parallel

• rec: python3

  interactive high-level object-oriented language (default python3 version)

• rec: python3-pil

  Python Imaging Library (Python3)

下載 last-align

下載可用於所有硬體架構的

硬體架構	版本	套件大小	安裝後大小	檔案
amd64	1179-1+b1	1，826。5 kB	21，262。0 kB	[檔案列表]
arm64	1179-1+b1	751。8 kB	3，742。0 kB	[檔案列表]
armel	1179-1+b1	682。4 kB	3，778。0 kB	[檔案列表]
armhf	1179-1+b1	679。5 kB	2，910。0 kB	[檔案列表]
i386	1179-1+b1	3，016。0 kB	29，262。0 kB	[檔案列表]
mips64el	1179-1+b1	798。0 kB	4，606。0 kB	[檔案列表]
mipsel	1179-1+b1	732。3 kB	4，556。0 kB	[檔案列表]
ppc64el	1179-1+b1	843。7 kB	4，850。0 kB	[檔案列表]
s390x	1179-1+b1	775。4 kB	4，234。0 kB	[檔案列表]