套件：samtools（1.16.1-1）

[ 原始碼： samtools  ]

processing sequence alignments in SAM, BAM and CRAM formats

Samtools is a set of utilities that manipulate nucleotide sequence alignments in the binary BAM format. It imports from and exports to the ascii SAM (Sequence Alignment/Map) and CRAM formats, does sorting, merging and indexing, and allows one to retrieve reads in any regions swiftly. It is designed to work on a stream, and is able to open a BAM or CRAM (not SAM) file on a remote FTP or HTTP server.

標籤: 領域: 生物學, 生物資訊學, 實做語言: implemented-in::c, interface::commandline, 網路: 客戶端, Network Protocol: FTP, protocol::http, role::program, 範圍: 實用程式, Interface Toolkit: Ncurses TUI, Purpose: use::analysing, use::calculating, Filtering, 處理: Biological Sequence

其他與 samtools 有關的套件

• dep: libc6 (>= 2.34)

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

• dep: libhts3 (>= 1.16)

  C library for high-throughput sequencing data formats

• dep: libncurses6 (>= 6)

  shared libraries for terminal handling

• dep: libtinfo6 (>= 6)

  shared low-level terminfo library for terminal handling

• dep: zlib1g (>= 1:1.1.4) [除 armel, armhf, i386, mipsel]

  壓縮函式庫 - 跑程式時用(runtime)

  dep: zlib1g (>= 1:1.2.3.3) [armel, armhf, i386, mipsel]

• sug: cwltool

  Common Workflow Language reference implementation

下載 samtools

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硬體架構	套件大小	安裝後大小	檔案
amd64	592。4 kB	1，304。0 kB	[檔案列表]
arm64	566。4 kB	1，580。0 kB	[檔案列表]
armel	558。8 kB	1，573。0 kB	[檔案列表]
armhf	561。4 kB	1，445。0 kB	[檔案列表]
i386	622。1 kB	1，417。0 kB	[檔案列表]
mips64el	572。9 kB	1，729。0 kB	[檔案列表]
mipsel	581。2 kB	1，659。0 kB	[檔案列表]
ppc64el	614。7 kB	1，836。0 kB	[檔案列表]
s390x	566。6 kB	1，332。0 kB	[檔案列表]