全部搜尋項
buster  ] [  bullseye  ] [  bookworm  ] [  trixie  ] [  sid  ]
[ 原始碼: kmer  ]

套件:atac(0~20150903+r2013-8 以及其他的)

atac 的相關連結

Screenshot

Debian 的資源:

下載原始碼套件 kmer

維護小組:

外部的資源:

相似套件:

genome assembly-to-assembly comparison

atac computes a one-to-one pairwise alignment of large DNA sequences. It first finds the unique k-mers in each sequence, chains them to larger blocks, and fills in spaces between blocks. It was written primarily to transfer annotations between different assemblies of the human genome.

The output is a set of ungapped 'matches', and a set of gapped 'runs' formed from the matches. Each match or run associates one sequence with the other sequence. The association is 'unique', in that there is no other (sizeable) associations for either sequence. Thus, large repeats and duplications are not present in the output - they appear as unmapped regions.

Though the output is always pairwise, atac can cache intermediate results to speed a comparisons of multiple sequences.

This package is part of the Kmer suite.

其他與 atac 有關的套件

  • 依賴
  • 推薦
  • 建議
  • 增強

下載 atac

下載可用於所有硬體架構的
硬體架構 版本 套件大小 安裝後大小 檔案
ppc64el 0~20150903+r2013-8+b3 398。5 kB3,681。0 kB [檔案列表]