套件：r-bioc-genomicalignments（1.34.0-1）

[ 原始碼： r-bioc-genomicalignments  ]

BioConductor representation and manipulation of short genomic alignments

This BioConductor package provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This includes read counting, computing the coverage, junction detection, and working with the nucleotide content of the alignments.

其他與 r-bioc-genomicalignments 有關的套件

• dep: libc6 (>= 2.17) [arm64, ppc64el]

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

  dep: libc6 (>= 2.4) [除 arm64, ppc64el]

• dep: r-api-4.0

  本虛擬套件由這些套件填實： r-base-core

• dep: r-api-bioc-3.16

  本虛擬套件由這些套件填實： r-bioc-biocgenerics

• dep: r-base-core (>= 4.2.2.20221110-1)

  GNU R core of statistical computation and graphics system

• dep: r-bioc-biocgenerics (>= 0.37.0)

  generic functions for Bioconductor

• dep: r-bioc-biocparallel

  BioConductor facilities for parallel evaluation

• dep: r-bioc-biostrings (>= 2.55.7)

  GNU R string objects representing biological sequences

• dep: r-bioc-genomeinfodb (>= 1.13.1)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicranges (>= 1.41.5)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges (>= 2.23.9)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-rsamtools (>= 1.31.2)

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• dep: r-bioc-s4vectors (>= 0.27.12)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-summarizedexperiment (>= 1.9.13)

  BioConductor assay container

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-bsgenome

  BioConductor infrastructure for Biostrings-based genome data packages

• sug: r-bioc-deseq2

  R package for RNA-Seq Differential Expression Analysis

• sug: r-bioc-edger

  Empirical analysis of digital gene expression data in R

• sug: r-bioc-genomicfeatures

  GNU R tools for making and manipulating transcript centric annotations

• sug: r-bioc-rtracklayer

  GNU R interface to genome browsers and their annotation tracks

• sug: r-bioc-shortread

  GNU R classes and methods for high-throughput short-read sequencing data

• sug: r-cran-runit

  GNU R package providing unit testing framework

下載 r-bioc-genomicalignments

下載可用於所有硬體架構的

硬體架構	套件大小	安裝後大小	檔案
amd64	2，062。8 kB	2，909。0 kB	[檔案列表]
arm64	2，062。0 kB	2，969。0 kB	[檔案列表]
armel	2，058。7 kB	2，904。0 kB	[檔案列表]
armhf	2，059。2 kB	2，904。0 kB	[檔案列表]
i386	2，025。0 kB	2，874。0 kB	[檔案列表]
mips64el	2，058。8 kB	2，975。0 kB	[檔案列表]
mipsel	2，059。0 kB	2，910。0 kB	[檔案列表]
ppc64el	2，064。2 kB	2，969。0 kB	[檔案列表]
s390x	2，061。5 kB	2，913。0 kB	[檔案列表]