squeeze 发行版中 all 硬件架构下的 libbiojava-java-demos 软件包文件清单

/usr/share/doc/libbiojava-java-demos/changelog.Debian.gz
/usr/share/doc/libbiojava-java-demos/copyright
/usr/share/doc/libbiojava-java-demos/examples/CircLocTest/CircularLocationTester.java
/usr/share/doc/libbiojava-java-demos/examples/CircLocTest/TestFrame.java.gz
/usr/share/doc/libbiojava-java-demos/examples/ListChangeTypes.java
/usr/share/doc/libbiojava-java-demos/examples/RFetch.java
/usr/share/doc/libbiojava-java-demos/examples/annodb/CreateIndexDB.java
/usr/share/doc/libbiojava-java-demos/examples/biosql/DummyFromGFF.java
/usr/share/doc/libbiojava-java-demos/examples/biosql/LargeSequenceTest.java
/usr/share/doc/libbiojava-java-demos/examples/biosql/SeqDumper.java
/usr/share/doc/libbiojava-java-demos/examples/biosql/SeqEMBL.java
/usr/share/doc/libbiojava-java-demos/examples/biosql/SeqGFF.java
/usr/share/doc/libbiojava-java-demos/examples/biosql/SequenceTest.java.gz
/usr/share/doc/libbiojava-java-demos/examples/biosql/UploadFlat.java
/usr/share/doc/libbiojava-java-demos/examples/blastxml/BlastParser.java
/usr/share/doc/libbiojava-java-demos/examples/blastxml/input.xml.gz
/usr/share/doc/libbiojava-java-demos/examples/das/TestDAS.java
/usr/share/doc/libbiojava-java-demos/examples/das/TestDASG.java
/usr/share/doc/libbiojava-java-demos/examples/das/TestDASH.java
/usr/share/doc/libbiojava-java-demos/examples/das/TestDSN.java
/usr/share/doc/libbiojava-java-demos/examples/dist/TestDistribution.java
/usr/share/doc/libbiojava-java-demos/examples/dist/TestOrderNAlphabet.java
/usr/share/doc/libbiojava-java-demos/examples/dist/TestOrderNDistribution.java.gz
/usr/share/doc/libbiojava-java-demos/examples/dist/Tools.java
/usr/share/doc/libbiojava-java-demos/examples/dp/Dice.java.gz
/usr/share/doc/libbiojava-java-demos/examples/dp/PairwiseAlignment.java.gz
/usr/share/doc/libbiojava-java-demos/examples/dp/PatternFinder.java
/usr/share/doc/libbiojava-java-demos/examples/dp/SearchProfile.java.gz
/usr/share/doc/libbiojava-java-demos/examples/dp/ViterbiAlign.java.gz
/usr/share/doc/libbiojava-java-demos/examples/dp/fake.fasta.gz
/usr/share/doc/libbiojava-java-demos/examples/dp/fakepromoter.xml.gz
/usr/share/doc/libbiojava-java-demos/examples/dp/package.html
/usr/share/doc/libbiojava-java-demos/examples/eventbasedparsing/Blast2HTML.java.gz
/usr/share/doc/libbiojava-java-demos/examples/eventbasedparsing/BlastLike2XML.java.gz
/usr/share/doc/libbiojava-java-demos/examples/eventbasedparsing/Fasta2XML.java
/usr/share/doc/libbiojava-java-demos/examples/eventbasedparsing/Pdb2XML.java
/usr/share/doc/libbiojava-java-demos/examples/eventbasedparsing/TutorialEx1.java
/usr/share/doc/libbiojava-java-demos/examples/eventbasedparsing/TutorialEx1Handler.java
/usr/share/doc/libbiojava-java-demos/examples/eventbasedparsing/stylesheets/copyall.xsl
/usr/share/doc/libbiojava-java-demos/examples/eventbasedparsing/stylesheets/hitlisthtml.xsl
/usr/share/doc/libbiojava-java-demos/examples/files/ACTN_HUMAN.uniprot.gz
/usr/share/doc/libbiojava-java-demos/examples/files/AF438419.embl.gz
/usr/share/doc/libbiojava-java-demos/examples/files/AL121903.embl.gz
/usr/share/doc/libbiojava-java-demos/examples/files/AL121903.genbank.gz
/usr/share/doc/libbiojava-java-demos/examples/files/ChrI.prom.fasta.gz
/usr/share/doc/libbiojava-java-demos/examples/files/GCG/blast.report.gz
/usr/share/doc/libbiojava-java-demos/examples/files/NP_001307.gp.gz
/usr/share/doc/libbiojava-java-demos/examples/files/clustal/keratin.aln.gz
/usr/share/doc/libbiojava-java-demos/examples/files/fake.fasta.gz
/usr/share/doc/libbiojava-java-demos/examples/files/fakepromoter.xml.gz
/usr/share/doc/libbiojava-java-demos/examples/files/fp_demo.db.gz
/usr/share/doc/libbiojava-java-demos/examples/files/fp_demo.m10.gz
/usr/share/doc/libbiojava-java-demos/examples/files/fp_queries.db
/usr/share/doc/libbiojava-java-demos/examples/files/hmmer/plus_tot.out.gz
/usr/share/doc/libbiojava-java-demos/examples/files/ncbiblast/Massive.out.gz
/usr/share/doc/libbiojava-java-demos/examples/files/ncbiblast/ReadMe
/usr/share/doc/libbiojava-java-demos/examples/files/ncbiblast/blastn.out.gz
/usr/share/doc/libbiojava-java-demos/examples/files/ncbiblast/blastp.out.gz
/usr/share/doc/libbiojava-java-demos/examples/files/ncbiblast/blastx.out.gz
/usr/share/doc/libbiojava-java-demos/examples/files/ncbiblast/shortBlastn.out.gz
/usr/share/doc/libbiojava-java-demos/examples/files/ncbiblast/tblastn.out.gz
/usr/share/doc/libbiojava-java-demos/examples/files/ncbiblast/tblastx.out.gz
/usr/share/doc/libbiojava-java-demos/examples/files/ncbiblast/unsuppVersionBlastn.out.gz
/usr/share/doc/libbiojava-java-demos/examples/files/ontology/biosapiens.obo.gz
/usr/share/doc/libbiojava-java-demos/examples/files/ontology/evidence_code.obo.gz
/usr/share/doc/libbiojava-java-demos/examples/files/ontology/so.obo.gz
/usr/share/doc/libbiojava-java-demos/examples/files/out.gff.gz
/usr/share/doc/libbiojava-java-demos/examples/files/pdb/12E8.pdb.gz
/usr/share/doc/libbiojava-java-demos/examples/files/pdb/hgh_ori.pdb.gz
/usr/share/doc/libbiojava-java-demos/examples/files/pdb/hmga_1.pdb.gz
/usr/share/doc/libbiojava-java-demos/examples/files/pdb/tnf.pdb.gz
/usr/share/doc/libbiojava-java-demos/examples/files/scoptest.fa
/usr/share/doc/libbiojava-java-demos/examples/files/test.hmm.gz
/usr/share/doc/libbiojava-java-demos/examples/files/varC4-2.dna.gz
/usr/share/doc/libbiojava-java-demos/examples/files/varC4-2.gff.gz
/usr/share/doc/libbiojava-java-demos/examples/files/wublast/blastn.out.gz
/usr/share/doc/libbiojava-java-demos/examples/files/wublast/blastp.out.gz
/usr/share/doc/libbiojava-java-demos/examples/files/wublast/blastx.out.gz
/usr/share/doc/libbiojava-java-demos/examples/files/wublast/sh_blastn.out.gz
/usr/share/doc/libbiojava-java-demos/examples/files/wublast/sh_blastp.out.gz
/usr/share/doc/libbiojava-java-demos/examples/files/wublast/sh_blastx.out.gz
/usr/share/doc/libbiojava-java-demos/examples/files/wublast/sh_tblastx.out.gz
/usr/share/doc/libbiojava-java-demos/examples/files/wublast/tblastn.out.gz
/usr/share/doc/libbiojava-java-demos/examples/files/wublast/tblastx.out.gz
/usr/share/doc/libbiojava-java-demos/examples/game/AE002734.game.gz
/usr/share/doc/libbiojava-java-demos/examples/game/README.txt
/usr/share/doc/libbiojava-java-demos/examples/game/SeqIOTatler.java
/usr/share/doc/libbiojava-java-demos/examples/game/TestGAME.java
/usr/share/doc/libbiojava-java-demos/examples/gff/AL121903.embl.gz
/usr/share/doc/libbiojava-java-demos/examples/gff/EmblToGffFasta.java
/usr/share/doc/libbiojava-java-demos/examples/gff/GFFCompare.java.gz
/usr/share/doc/libbiojava-java-demos/examples/gff/GFFFilter.java.gz
/usr/share/doc/libbiojava-java-demos/examples/gff/GFFMask.java.gz
/usr/share/doc/libbiojava-java-demos/examples/gff/GFFToFeatures.java
/usr/share/doc/libbiojava-java-demos/examples/gff/GenbankToGffFasta.java
/usr/share/doc/libbiojava-java-demos/examples/gff/SwissprotToGffFasta.java
/usr/share/doc/libbiojava-java-demos/examples/gff/XFF2GFF.java
/usr/share/doc/libbiojava-java-demos/examples/gff/varC4-2.gff.gz
/usr/share/doc/libbiojava-java-demos/examples/indexing/CreateFAIndex.java
/usr/share/doc/libbiojava-java-demos/examples/indexing/CreateIndex.java
/usr/share/doc/libbiojava-java-demos/examples/indexing/CreateSPIndex.java
/usr/share/doc/libbiojava-java-demos/examples/indexing/ListIDs.java
/usr/share/doc/libbiojava-java-demos/examples/indexing/ReadRaw.java
/usr/share/doc/libbiojava-java-demos/examples/indexing/ReadRawSecondary.java
/usr/share/doc/libbiojava-java-demos/examples/nativeapps/BlastLike2XML.java.gz
/usr/share/doc/libbiojava-java-demos/examples/nativeapps/Pdb2XML.java
/usr/share/doc/libbiojava-java-demos/examples/ontology/obo/ParseBioSapiensOntology.java
/usr/share/doc/libbiojava-java-demos/examples/performance/AlignProteins.java.gz
/usr/share/doc/libbiojava-java-demos/examples/performance/ReadFasta.java
/usr/share/doc/libbiojava-java-demos/examples/performance/ReadFastaX.java
/usr/share/doc/libbiojava-java-demos/examples/performance/ReadFastaX2.java
/usr/share/doc/libbiojava-java-demos/examples/performance/ReverseComplement.java.gz
/usr/share/doc/libbiojava-java-demos/examples/performance/SmithWatermanExample.java.gz
/usr/share/doc/libbiojava-java-demos/examples/performance/UserDisplay.java
/usr/share/doc/libbiojava-java-demos/examples/performance/package.html
/usr/share/doc/libbiojava-java-demos/examples/process/ProcessToolsTest.java
/usr/share/doc/libbiojava-java-demos/examples/prot/TestDigestIO.java.gz
/usr/share/doc/libbiojava-java-demos/examples/search/IndexFastaDB.java
/usr/share/doc/libbiojava-java-demos/examples/seq/AL121903.embl.gz
/usr/share/doc/libbiojava-java-demos/examples/seq/AL121903.genbank.gz
/usr/share/doc/libbiojava-java-demos/examples/seq/FetchSeq.java
/usr/share/doc/libbiojava-java-demos/examples/seq/GCContent.java
/usr/share/doc/libbiojava-java-demos/examples/seq/MotifFinder2.java
/usr/share/doc/libbiojava-java-demos/examples/seq/ReverseComplement.java
/usr/share/doc/libbiojava-java-demos/examples/seq/SimpleAssemblyTest.java
/usr/share/doc/libbiojava-java-demos/examples/seq/TestEmbl.java
/usr/share/doc/libbiojava-java-demos/examples/seq/TestEmbl2.java
/usr/share/doc/libbiojava-java-demos/examples/seq/TestGenbank.java
/usr/share/doc/libbiojava-java-demos/examples/seq/TestRefSeqPrt.java
/usr/share/doc/libbiojava-java-demos/examples/seq/TestSubSequence.java
/usr/share/doc/libbiojava-java-demos/examples/seq/TestSwissprot.java
/usr/share/doc/libbiojava-java-demos/examples/seq/TestTranslation.java
/usr/share/doc/libbiojava-java-demos/examples/seq/UniProtDemo.java
/usr/share/doc/libbiojava-java-demos/examples/seq/db/AddFilesToIndex.java
/usr/share/doc/libbiojava-java-demos/examples/seq/db/CreateIndex.java
/usr/share/doc/libbiojava-java-demos/examples/seq/db/FetchSequence.java
/usr/share/doc/libbiojava-java-demos/examples/seq/db/ListSeqsInIndex.java
/usr/share/doc/libbiojava-java-demos/examples/seq/utrs.fa
/usr/share/doc/libbiojava-java-demos/examples/seqviewer/BeadDemo.java.gz
/usr/share/doc/libbiojava-java-demos/examples/seqviewer/CircularEmblViewer.java.gz
/usr/share/doc/libbiojava-java-demos/examples/seqviewer/EmblViewer.java.gz
/usr/share/doc/libbiojava-java-demos/examples/seqviewer/EmblViewer2.java.gz
/usr/share/doc/libbiojava-java-demos/examples/seqviewer/FastBeadDemo.java.gz
/usr/share/doc/libbiojava-java-demos/examples/seqviewer/GappedViewer.java
/usr/share/doc/libbiojava-java-demos/examples/seqviewer/TraceViewer.java
/usr/share/doc/libbiojava-java-demos/examples/seqviewer/test.fa
/usr/share/doc/libbiojava-java-demos/examples/ssaha/CreateDNAFastaHashTable.java
/usr/share/doc/libbiojava-java-demos/examples/ssaha/CreateDNAFastaHashTableCompact.java
/usr/share/doc/libbiojava-java-demos/examples/ssaha/CreateDNAFastaHashTableLarge.java
/usr/share/doc/libbiojava-java-demos/examples/ssaha/CreateEmblHashTable.java
/usr/share/doc/libbiojava-java-demos/examples/ssaha/CreateEmblHashTableLarge.java
/usr/share/doc/libbiojava-java-demos/examples/ssaha/ResultPrinter.java
/usr/share/doc/libbiojava-java-demos/examples/ssaha/SSAHA.java
/usr/share/doc/libbiojava-java-demos/examples/ssaha/SSAHALarge.java
/usr/share/doc/libbiojava-java-demos/examples/ssaha/SSAHASeq.java
/usr/share/doc/libbiojava-java-demos/examples/ssaha/SSAHASeqLarge.java
/usr/share/doc/libbiojava-java-demos/examples/ssbind/AlignmentBuilder.java
/usr/share/doc/libbiojava-java-demos/examples/ssbind/CountHits.java
/usr/share/doc/libbiojava-java-demos/examples/ssbind/CountSubHits.java
/usr/share/doc/libbiojava-java-demos/examples/ssbind/Echoer.java
/usr/share/doc/libbiojava-java-demos/examples/ssbind/FilterByValue.java
/usr/share/doc/libbiojava-java-demos/examples/ssbind/ListQueries.java
/usr/share/doc/libbiojava-java-demos/examples/ssbind/ListSubjects.java
/usr/share/doc/libbiojava-java-demos/examples/ssbind/ProcessBlastReport.java.gz
/usr/share/doc/libbiojava-java-demos/examples/ssbind/PropertyEchoer.java
/usr/share/doc/libbiojava-java-demos/examples/ssbind/SubHitBuilder.java
/usr/share/doc/libbiojava-java-demos/examples/ssbind/SubHitFilter.java
/usr/share/doc/libbiojava-java-demos/examples/structure/LoadStructure.java
/usr/share/doc/libbiojava-java-demos/examples/structure/PDBView.java
/usr/share/doc/libbiojava-java-demos/examples/structure/PhiPsiCalculation.java
/usr/share/doc/libbiojava-java-demos/examples/structure/SuperimposeStructures.java
/usr/share/doc/libbiojava-java-demos/examples/symbol/MatrixValue.java
/usr/share/doc/libbiojava-java-demos/examples/symbol/PatternDemo.java.gz
/usr/share/doc/libbiojava-java-demos/examples/symbol/TestAlphabetIndexers.java
/usr/share/doc/libbiojava-java-demos/examples/symbol/TestAmbiguity.java.gz
/usr/share/doc/libbiojava-java-demos/examples/symbol/TestGappedSymbolList.java
/usr/share/doc/libbiojava-java-demos/examples/symbol/TestIndexedIntegers.java
/usr/share/doc/libbiojava-java-demos/examples/symbol/TestLocation.java
/usr/share/doc/libbiojava-java-demos/examples/symbol/TestOrderNSymbolList.java
/usr/share/doc/libbiojava-java-demos/examples/symbol/TestSimpleAlignment.java
/usr/share/doc/libbiojava-java-demos/examples/symbol/TestWindowedSymbolList.java
/usr/share/doc/libbiojava-java-demos/examples/symbol/Tools.java
/usr/share/doc/libbiojava-java-demos/examples/symbol/WindowCount.java.gz
/usr/share/doc/libbiojava-java-demos/examples/tagvalue/Grep.java
/usr/share/doc/libbiojava-java-demos/examples/tagvalue/Index.java
/usr/share/doc/libbiojava-java-demos/examples/tagvalue/Parse.java
/usr/share/doc/libbiojava-java-demos/examples/tagvalue/ParseEmbl.java
/usr/share/doc/libbiojava-java-demos/examples/tagvalue/ParseSwissprot.java
/usr/share/doc/libbiojava-java-demos/examples/tagvalue/PrintFormat.java
/usr/share/doc/libbiojava-java-demos/examples/unigene/CreateUnigeneFlat.java
/usr/share/doc/libbiojava-java-demos/examples/unigene/ParseLibInfo.java
/usr/share/doc/libbiojava-java-demos/examples/unigene/ParseUnigene.java
/usr/share/doc/libbiojava-java-demos/examples/unigene/SearchUnigeneFlat.java
/usr/share/doc/libbiojava-java-demos/examples/xff/TestXFFStreaming.java