[ 源代码： skesa ]
软件包：skesa（2.4.0-6 以及其他的）
strategic Kmer extension for scrupulous assemblies
SKESA is a DeBruijn graph-based de-novo assembler designed for assembling reads of microbial genomes sequenced using Illumina. Comparison with SPAdes and MegaHit shows that SKESA produces assemblies that have high sequence quality and contiguity, handles low-level contamination in reads, is fast, and produces an identical assembly for the same input when assembled multiple times with the same or different compute resources. SKESA has been used for assembling over 272,000 read sets in the Sequence Read Archive at NCBI and for real-time pathogen detection.
其他与 skesa 有关的软件包
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- dep: libboost-iostreams1.83.0 (>= 1.83.0) [除 x32]
- Boost.Iostreams Library
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- dep: libboost-program-options1.83.0 (>= 1.83.0) [除 x32]
- program options library for C++
-
- dep: libboost-timer1.83.0 (>= 1.83.0) [除 x32]
- C++ wall clock and CPU process timers
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- dep: libc6 (>= 2.34)
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC 支持库
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- dep: libncbi-vdb2 (>= 2.11.2+dfsg) [x32]
- 软件包暂时不可用
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- dep: libncbi-vdb3 (>= 3.0.2+dfsg) [除 x32]
- libraries for using data in the INSDC Sequence Read Archives
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- dep: libngs-c++3 (>= 3.0.3+dfsg) [除 x32]
- Next Generation Sequencing language Bindings (C++ runtime)
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- dep: libstdc++6 (>= 12.2.0-9) [x32]
- GNU 标准 C++ 库，第3版
- dep: libstdc++6 (>= 13.1) [除 x32]
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- dep: zlib1g (>= 1:1.1.4) [x32]
- 压缩库 - 运行时