软件包：ea-utils（1.1.2+dfsg-9 以及其他的）

[ 源代码： ea-utils  ]

command-line tools for processing biological sequencing data

Ea-utils provides a set of command-line tools for processing biological sequencing data, barcode demultiplexing, adapter trimming, etc.

Primarily written to support an Illumina based pipeline - but should work with any FASTQs.

Main Tools are:

 * fastq-mcf

Scans a sequence file for adapters, and, based on a log-scaled threshold, determines a set of clipping parameters and performs clipping. Also does skewing detection and quality filtering.

 * fastq-multx

Demultiplexes a fastq. Capable of auto-determining barcode id's based on a master set fields. Keeps multiple reads in-sync during demultiplexing. Can verify that the reads are in-sync as well, and fail if they're not.

 * fastq-join

Similar to audy's stitch program, but in C, more efficient and supports some automatic benchmarking and tuning. It uses the same "squared distance for anchored alignment" as other tools.

 * varcall

Takes a pileup and calculates variants in a more easily parameterized manner than some other tools.

其他与 ea-utils 有关的软件包

• dep: libc6 (>= 2.29) [hppa, m68k, ppc64, sparc64, x32]

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

  dep: libc6 (>= 2.32) [sh4]

  dep: libc6 (>= 2.34) [除 alpha, hppa, ia64, m68k, ppc64, sh4, sparc64, x32]

• dep: libc6.1 (>= 2.29) [alpha]

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6.1-udeb

  dep: libc6.1 (>= 2.32) [ia64]

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, ppc64, ppc64el, s390x, x32]

  GCC 支持库

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sh4, sparc64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC 支持库

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC 支持库

• dep: libgsl25 (>= 2.6) [alpha]

  软件包暂时不可用

• dep: libgsl27 (>= 2.7.1) [除 alpha]

  GNU Scientific Library (GSL) -- library package

• dep: libgslcblas0 (>= 2.7.1) [sparc64]

  GNU Scientific Library (GSL) -- blas library package

• dep: libstdc++6 (>= 11)

  GNU 标准 C++ 库，第3版

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: r-base-core

  GNU R core of statistical computation and graphics system

• dep: r-cran-formula

  GNU R package for extended model formulas

• dep: r-cran-getopt

  GNU R package providing command-line parsing functionality

• dep: r-cran-ggplot2

  implementation of the Grammar of Graphics

• dep: r-cran-hmisc

  GNU R miscellaneous functions by Frank Harrell

• dep: r-cran-lattice

  GNU R package for 'Trellis' graphics

• dep: r-cran-survival

  GNU R package for survival analysis

• dep: zlib1g (>= 1:1.2.3.3)

  压缩库 - 运行时

• rec: med-config (>= 2.1)

  Debian Med general config package

下载 ea-utils

下载可用于所有硬件架构的

硬件架构	版本	软件包大小	安装后大小	文件
alpha （非官方移植版）	1.1.2+dfsg-9+b1	243.0 kB	870.0 kB	[文件列表]
amd64	1.1.2+dfsg-9+b2	230.6 kB	747.0 kB	[文件列表]
arm64	1.1.2+dfsg-9+b2	208.9 kB	1,003.0 kB	[文件列表]
armel	1.1.2+dfsg-9+b2	208.8 kB	996.0 kB	[文件列表]
armhf	1.1.2+dfsg-9+b2	205.7 kB	740.0 kB	[文件列表]
hppa （非官方移植版）	1.1.2+dfsg-9+b1	237.5 kB	769.0 kB	[文件列表]
i386	1.1.2+dfsg-9+b2	242.5 kB	760.0 kB	[文件列表]
ia64 （非官方移植版）	1.1.2+dfsg-9+b1	300.4 kB	1,332.0 kB	[文件列表]
m68k （非官方移植版）	1.1.2+dfsg-9+b1	221.4 kB	756.0 kB	[文件列表]
mips64el	1.1.2+dfsg-9+b2	229.8 kB	1,094.0 kB	[文件列表]
ppc64 （非官方移植版）	1.1.2+dfsg-9+b1	243.8 kB	1,131.0 kB	[文件列表]
ppc64el	1.1.2+dfsg-9+b2	241.5 kB	1,323.0 kB	[文件列表]
riscv64 （非官方移植版）	1.1.2+dfsg-9+b2	217.4 kB	617.0 kB	[文件列表]
s390x	1.1.2+dfsg-9+b2	212.0 kB	747.0 kB	[文件列表]
sh4 （非官方移植版）	1.1.2+dfsg-9+b1	262.8 kB	703.0 kB	[文件列表]
sparc64 （非官方移植版）	1.1.2+dfsg-9+b1	210.2 kB	769.0 kB	[文件列表]
x32 （非官方移植版）	1.1.2+dfsg-9+b1	229.9 kB	736.0 kB	[文件列表]