软件包：biobambam2（2.0.185+ds-1 以及其他的）

biobambam2 的相关链接

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下载源码包 biobambam2：

维护小组：

外部的资源：

主页 [gitlab.com]

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tools for early stage alignment file processing

This package contains some tools for processing BAM files, including

  bamsormadup:  parallel sorting and duplicate marking
  bamcollate2:  reads BAM and writes BAM reordered such that alignment
                or collated by query name
  bammarkduplicates: reads BAM and writes BAM with duplicate alignments
                marked using the BAM flags field
  bammaskflags: reads BAM and writes BAM while masking (removing) bits
                from the flags column
  bamrecompress: reads BAM and writes BAM with a defined compression
                 setting. This tool is capable of multi-threading.
  bamsort:       reads BAM and writes BAM resorted by coordinates or
                 query name
  bamtofastq:    reads BAM and writes FastQ; output can be collated
                 or uncollated by query name

其他与 biobambam2 有关的软件包

依赖

推荐

建议

增强

dep: libc6 (>= 2.34) [除 alpha, ia64]

GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
dep: libc6.1 (>= 2.34) [alpha]

GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6.1-udeb

dep: libc6.1 (>= 2.37) [ia64]
dep: libgcc-s1 (>= 3.0) [arm64, ppc64el]

GCC 支持库

dep: libgcc-s1 (>= 3.4) [除 arm64, i386, ia64, ppc64el]

dep: libgcc-s1 (>= 4.2) [ia64]

dep: libgcc-s1 (>= 7) [i386]
dep: libgomp1 (>= 6)

GCC OpenMP（GOMP）支持库
dep: libmaus2-2 (>= 2.0.812+ds) [alpha]

collection of data structures and algorithms for biobambam

dep: libmaus2-2 (>= 2.0.813+ds) [除 alpha]
dep: libstdc++6 (>= 11) [除 ia64, mips64el, riscv64]

GNU 标准 C++ 库，第3版

dep: libstdc++6 (>= 13.1) [ia64, mips64el, riscv64]
dep: libunwind8 [ia64]

library to determine the call-chain of a program - runtime
dep: zlib1g (>= 1:1.1.4)

压缩库 - 运行时

下载 biobambam2

下载可用于所有硬件架构的
硬件架构	版本	软件包大小	安装后大小	文件
alpha （非官方移植版）	2.0.185+ds-1	10,029.6 kB	81,440.0 kB	[文件列表]
amd64	2.0.185+ds-1	9,346.1 kB	64,727.0 kB	[文件列表]
arm64	2.0.185+ds-1	8,478.3 kB	63,459.0 kB	[文件列表]
i386	2.0.185+ds-1	9,987.0 kB	72,831.0 kB	[文件列表]
ia64 （非官方移植版）	2.0.185+ds-1	10,229.7 kB	117,346.0 kB	[文件列表]
mips64el	2.0.185+ds-1	7,603.1 kB	75,740.0 kB	[文件列表]
ppc64el	2.0.185+ds-1	9,189.8 kB	78,371.0 kB	[文件列表]
riscv64	2.0.185+ds-1+b2	8,817.5 kB	51,672.0 kB	[文件列表]
x32 （非官方移植版）	2.0.185+ds-1	9,350.0 kB	61,191.0 kB	[文件列表]