软件包：baitfisher（1.2.7+git20211020.de26d5c+dfsg-1 以及其他的）

[ 源代码： baitfisher  ]

software package for designing hybrid enrichment probes

The BaitFisher package consists of two programs: BaitFisher and BaitFilter.

BaitFisher was been designed to construct hybrid enrichment baits from multiple sequence alignments (MSAs) or annotated features in MSAs. The main goal of BaitFisher is to avoid redundancy in the construction of baits by designing fewer baits in conserved regions of the MSAs and designing more baits in variable regions. This makes use of the fact that hybrid enrichment baits can differ to some extends from the target region, which they should capture in the enrichment procedure. By specifying the allowed distance between baits and the sequences in the MSAs the user can control the allowed bait-to-target distance and the degree of reduction in the number of baits that are designed. See the BaitFisher paper for details.

BaitFilter was designed (i) to determine whether baits bind unspecifically to a reference genome, (ii) to filter baits that only have partial length matches to a reference genome, (iii) to determine the optimal bait region in a MSA and to convert baits to a format that can be uploaded at a bait constructing company. The optimal bait region can be the most conserved region in the MSA or the region with the highest number of sequences without gaps or ambiguous nucleotides.

其他与 baitfisher 有关的软件包

• dep: libc6 (>= 2.33) [除 alpha, ia64, riscv64]

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

  dep: libc6 (>= 2.34) [riscv64]

• dep: libc6.1 (>= 2.33) [alpha, ia64]

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6.1-udeb

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, i386, mips64el, ppc64, ppc64el, s390x, x32]

  GCC 支持库

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sh4, sparc64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC 支持库

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC 支持库

• dep: libstdc++6 (>= 11) [除 riscv64]

  GNU 标准 C++ 库，第3版

  dep: libstdc++6 (>= 13.1) [riscv64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

下载 baitfisher

下载可用于所有硬件架构的

硬件架构	版本	软件包大小	安装后大小	文件
alpha （非官方移植版）	1.2.7+git20211020.de26d5c+dfsg-1	198.4 kB	764.0 kB	[文件列表]
amd64	1.2.7+git20211020.de26d5c+dfsg-1	196.0 kB	642.0 kB	[文件列表]
arm64	1.2.7+git20211020.de26d5c+dfsg-1	172.3 kB	590.0 kB	[文件列表]
armel	1.2.7+git20211020.de26d5c+dfsg-1	165.6 kB	572.0 kB	[文件列表]
armhf	1.2.7+git20211020.de26d5c+dfsg-1	171.4 kB	460.0 kB	[文件列表]
hppa （非官方移植版）	1.2.7+git20211020.de26d5c+dfsg-1	189.4 kB	621.0 kB	[文件列表]
i386	1.2.7+git20211020.de26d5c+dfsg-1	210.5 kB	672.0 kB	[文件列表]
ia64 （非官方移植版）	1.2.7+git20211020.de26d5c+dfsg-1	241.7 kB	1,174.0 kB	[文件列表]
m68k （非官方移植版）	1.2.7+git20211020.de26d5c+dfsg-1	192.4 kB	664.0 kB	[文件列表]
mips64el	1.2.7+git20211020.de26d5c+dfsg-1	182.0 kB	749.0 kB	[文件列表]
ppc64 （非官方移植版）	1.2.7+git20211020.de26d5c+dfsg-1	195.6 kB	842.0 kB	[文件列表]
ppc64el	1.2.7+git20211020.de26d5c+dfsg-1	195.9 kB	778.0 kB	[文件列表]
riscv64	1.2.7+git20211020.de26d5c+dfsg-1+b2	197.1 kB	551.0 kB	[文件列表]
s390x	1.2.7+git20211020.de26d5c+dfsg-1	177.6 kB	642.0 kB	[文件列表]
sh4 （非官方移植版）	1.2.7+git20211020.de26d5c+dfsg-1	224.7 kB	610.0 kB	[文件列表]
sparc64 （非官方移植版）	1.2.7+git20211020.de26d5c+dfsg-1	167.8 kB	633.0 kB	[文件列表]
x32 （非官方移植版）	1.2.7+git20211020.de26d5c+dfsg-1	196.4 kB	612.0 kB	[文件列表]