[ 源代码： abpoa ]
软件包：python3-pyabpoa（1.5.1-1）
adaptive banded Partial Order Alignment - python3 module
abPOA is an extended version of Partial Order Alignment (POA) that performs adaptive banded dynamic programming (DP) with an SIMD implementation. abPOA can perform multiple sequence alignment (MSA) on a set of input sequences and generate a consensus sequence by applying the heaviest bundling algorithm to the final alignment graph.
abPOA can generate high-quality consensus sequences from error-prone long reads and offer significant speed improvement over existing tools.
abPOA supports three alignment modes (global, local, extension) and flexible scoring schemes that allow linear, affine and convex gap penalties. It right now supports SSE2/SSE4.1/AVX2 vectorization.
This package provides the python3 module of abPOA.
其他与 python3-pyabpoa 有关的软件包
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- dep: libc6 (>= 2.33)
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
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- dep: python3 (<< 3.13)
- 交互式高级面向对象语言（默认 python3 版本）
- dep: python3 (>= 3.11~)
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- dep: zlib1g (>= 1:1.1.4)
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