[ 源代码： pairtools ]
软件包：python3-pairtools（1.0.3-1 以及其他的）
Framework to process sequencing data from a Hi-C experiment
Simple and fast command-line framework to process sequencing data from a Hi-C experiment.
Process pair-end sequence alignments and perform the following operations:
- Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
sequences of Hi-C DNA molecules
- Sort .pairs files for downstream analyses
- Detect, tag and remove PCR/optical duplicates
- Generate extensive statistics of Hi-C datasets
- Select Hi-C pairs given flexibly defined criteria
- Restore .sam alignments from Hi-C pairs
其他与 python3-pairtools 有关的软件包
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- dep: cython3 [hppa, ia64, ppc64, sparc64, x32]
- C-Extensions for Python 3
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- dep: libc6 (>= 2.14) [amd64]
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
- dep: libc6 (>= 2.16) [x32]
- dep: libc6 (>= 2.17) [arm64, ppc64el]
- dep: libc6 (>= 2.27) [riscv64]
- dep: libc6 (>= 2.3.4) [hppa]
- dep: libc6 (>= 2.37) [sh4]
- dep: libc6 (>= 2.4) [armel, armhf, i386, m68k, mips64el, ppc64, sparc64]
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- dep: libc6.1 (>= 2.33) [ia64]
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6.1-udeb
- dep: libc6.1 (>= 2.4) [alpha]
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- dep: libgcc-s1 (>= 3.0) [alpha, amd64, arm64, i386, mips64el, ppc64el, riscv64, sh4]
- GCC 支持库
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
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- dep: libgcc-s2 (>= 4.2.1) [m68k]
- GCC 支持库
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- dep: libstdc++6 (>= 11) [除 hppa, ia64, ppc64, sparc64, x32]
- GNU 标准 C++ 库，第3版
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- dep: python3
- 交互式高级面向对象语言（默认 python3 版本）
- dep: python3 (<< 3.11) [ia64, x32]
- dep: python3 (<< 3.12) [hppa, ppc64, sparc64]
- dep: python3 (<< 3.13) [除 hppa, ia64, ppc64, sparc64, x32]
- dep: python3 (>= 3.10~) [hppa, ia64, ppc64, sparc64, x32]
- dep: python3 (>= 3.11~) [除 hppa, ia64, ppc64, sparc64, x32]
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- dep: python3-bioframe [除 hppa, ia64, ppc64, sparc64, x32]
- library to enable flexible, scalable operations on genomic interval dataframes
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- dep: python3-click
- Wrapper around optparse for command line utilities - Python 3.x
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- dep: python3-nose [hppa, ia64, ppc64, sparc64, x32]
- test discovery and running for Python3 unittest
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- dep: python3-numpy (>= 1:1.20.0) [hppa, ia64, ppc64, sparc64, x32]
- Fast array facility to the Python language (Python 3)
- dep: python3-numpy (>= 1:1.22.0) [除 hppa, ia64, ppc64, sh4, sparc64, x32]
- dep: python3-numpy (>= 1:1.25.0) [sh4]
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- dep: python3-numpy-abi9
- 本虚包由这些包填实： python3-numpy
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- dep: python3-pandas [除 hppa, ia64, ppc64, sparc64, x32]
- data structures for "relational" or "labeled" data
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- dep: python3-pysam (>= 0.20.0+ds-3~) [除 hppa, ia64, ppc64, sparc64, x32]
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: python3-scipy [除 hppa, ia64, ppc64, sparc64, x32]
- scientific tools for Python 3
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- dep: python3-yaml [除 hppa, ia64, ppc64, sparc64, x32]
- YAML parser and emitter for Python3
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- sug: python3-pairtools-examples (>= 1.0.2)
- Process sequencing data from a Hi-C experiment (examples)
下载 python3-pairtools
| 硬件架构 | 版本 | 软件包大小 | 安装后大小 | 文件 |
|---|---|---|---|---|
| alpha （非官方移植版） | 1.0.3-1 | 207.9 kB | 1,177.0 kB | [文件列表] |
| amd64 | 1.0.3-1 | 226.4 kB | 1,021.0 kB | [文件列表] |
| arm64 | 1.0.3-1 | 202.3 kB | 1,043.0 kB | [文件列表] |
| armel | 1.0.3-1 | 199.0 kB | 903.0 kB | [文件列表] |
| armhf | 1.0.3-1 | 203.9 kB | 763.0 kB | [文件列表] |
| hppa （非官方移植版） | 0.3.0-3.2+b2 | 144.6 kB | 640.0 kB | [文件列表] |
| i386 | 1.0.3-1 | 226.5 kB | 1,007.0 kB | [文件列表] |
| ia64 （非官方移植版） | 0.3.0-3.2+b1 | 137.3 kB | 612.0 kB | [文件列表] |
| m68k （非官方移植版） | 1.0.3-1 | 202.5 kB | 923.0 kB | [文件列表] |
| mips64el | 1.0.3-1 | 194.3 kB | 1,191.0 kB | [文件列表] |
| ppc64 （非官方移植版） | 0.3.0-3.2+b2 | 146.6 kB | 752.0 kB | [文件列表] |
| ppc64el | 1.0.3-1 | 217.0 kB | 1,171.0 kB | [文件列表] |
| riscv64 | 1.0.3-1 | 221.6 kB | 871.0 kB | [文件列表] |
| sh4 （非官方移植版） | 1.0.3-1+b1 | 309.0 kB | 1,152.0 kB | [文件列表] |
| sparc64 （非官方移植版） | 0.3.0-3.2+b2 | 125.9 kB | 2,292.0 kB | [文件列表] |
| x32 （非官方移植版） | 0.3.0-3.2+b1 | 121.6 kB | 405.0 kB | [文件列表] |