全部搜索项
stretch-backports  ] [  buster  ] [  bullseye  ] [  sid  ]
[ 源代码: minimap2  ]

软件包:minimap2(2.17+dfsg-1)

minimap2 的相关链接

Screenshot

Debian 的资源:

下载源码包 minimap2

维护小组:

外部的资源:

相似软件包:

versatile pairwise aligner for genomic and spliced nucleotide sequences

Minimap2 is a versatile sequence alignment program that aligns DNA or mRNA sequences against a large reference database. Typical use cases include: (1) mapping PacBio or Oxford Nanopore genomic reads to the human genome; (2) finding overlaps between long reads with error rate up to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA or Direct RNA reads against a reference genome; (4) aligning Illumina single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full- genome alignment between two closely related species with divergence below ~15%.

For ~10kb noisy reads sequences, minimap2 is tens of times faster than mainstream long-read mappers such as BLASR, BWA-MEM, NGMLR and GMAP. It is more accurate on simulated long reads and produces biologically meaningful alignment ready for downstream analyses. For >100bp Illumina short reads, minimap2 is three times as fast as BWA-MEM and Bowtie2, and as accurate on simulated data. Detailed evaluations are available from the minimap2 paper or the preprint.

其他与 minimap2 有关的软件包

  • 依赖
  • 推荐
  • 建议
  • 增强

下载 minimap2

下载可用于所有硬件架构的
硬件架构 软件包大小 安装后大小 文件
amd64 366.4 kB500.0 kB [文件列表]
arm64 349.1 kB456.0 kB [文件列表]
armhf 348.1 kB411.0 kB [文件列表]
i386 374.1 kB527.0 kB [文件列表]
x32 (非官方移植版) 364.8 kB495.0 kB [文件列表]