软件包：exonerate（2.4.0-5 以及其他的） [debports]
generic tool for pairwise sequence comparison
Exonerate allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics. Much of the functionality of the Wise dynamic programming suite was reimplemented in C for better efficiency. Exonerate is an intrinsic component of the building of the Ensembl genome databases, providing similarity scores between RNA and DNA sequences and thus determining splice variants and coding sequences in general.
An In-silico PCR Experiment Simulation System (see the ipcress man page) is packaged with exonerate.
This package also comes with a selection of utilities for performing simple manipulations quickly on fasta files beyond 2Gb
其他与 exonerate 有关的软件包
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- dep: libc6.1 (>= 2.37)
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6.1-udeb
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- dep: libglib2.0-0t64 (>= 2.75.3)
- C 例程的 GLib 软件库
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- sug: wise
- comparison of biopolymers, like DNA and protein sequences
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- enh: bioperl-run
- BioPerl wrappers: scripts