- 主页 [kmer.sourceforge.net]
genome assembly-to-assembly comparison
atac computes a one-to-one pairwise alignment of large DNA sequences. It first finds the unique k-mers in each sequence, chains them to larger blocks, and fills in spaces between blocks. It was written primarily to transfer annotations between different assemblies of the human genome.
The output is a set of ungapped 'matches', and a set of gapped 'runs' formed from the matches. Each match or run associates one sequence with the other sequence. The association is 'unique', in that there is no other (sizeable) associations for either sequence. Thus, large repeats and duplications are not present in the output - they appear as unmapped regions.
Though the output is always pairwise, atac can cache intermediate results to speed a comparisons of multiple sequences.
This package is part of the Kmer suite.
其他与 atac 有关的软件包
- dep: leaff
- biological sequence library utilities and applications
- dep: libfile-which-perl
- Perl module for searching paths for executable programs
- dep: libgcc4 (>= 4.1.1)
- GCC 支持库
- dep: libstdc++6 (>= 5.2)
- GNU 标准 C++ 库，第3版
- dep: meryl
- in- and out-of-core kmer counting and utilities
- dep: perl
- 拉里 沃尔的实用报表提取语言(Perl)
- dep: python
- 交互式高级面向对象语言（Python2 版本）
- dep: python2.7
- 交互式高级面向对象语言 (2.7 版)
- rec: kmer-examples
- sample data for kmer suite of tools for DNA sequence analysis