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[ 源代码: fasttree  ]

软件包:fasttree(2.1.10-2)

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phylogenetic trees from alignments of nucleotide or protein sequences

FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. It handles alignments with up to a million of sequences in a reasonable amount of time and memory. For large alignments, FastTree is 100-1,000 times faster than PhyML 3.0 or RAxML 7.

FastTree is more accurate than PhyML 3 with default settings, and much more accurate than the distance-matrix methods that are traditionally used for large alignments. FastTree uses the Jukes-Cantor or generalized time-reversible (GTR) models of nucleotide evolution and the JTT (Jones-Taylor-Thornton 1992) model of amino acid evolution. To account for the varying rates of evolution across sites, FastTree uses a single rate for each site (the "CAT" approximation). To quickly estimate the reliability of each split in the tree, FastTree computes local support values with the Shimodaira-Hasegawa test (these are the same as PhyML 3's "SH-like local supports").

This package contains a single threaded version (fasttree) and a parallel version which uses OpenMP (fasttreMP).

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硬件架构 软件包大小 安装后大小 文件
alpha (非官方移植版) 171.3 kB515.0 kB [文件列表]
amd64 171.8 kB469.0 kB [文件列表]
arm64 163.6 kB457.0 kB [文件列表]
armel 168.6 kB489.0 kB [文件列表]
armhf 159.9 kB373.0 kB [文件列表]
hppa (非官方移植版) 165.1 kB455.0 kB [文件列表]
i386 172.6 kB501.0 kB [文件列表]
m68k (非官方移植版) 159.1 kB457.0 kB [文件列表]
mips 167.1 kB499.0 kB [文件列表]
mips64el 168.9 kB519.0 kB [文件列表]
mipsel 169.3 kB499.0 kB [文件列表]
powerpcspe (非官方移植版) 165.1 kB505.0 kB [文件列表]
ppc64 (非官方移植版) 177.0 kB635.0 kB [文件列表]
ppc64el 176.9 kB635.0 kB [文件列表]
riscv64 (非官方移植版) 163.5 kB379.0 kB [文件列表]
s390x 160.9 kB477.0 kB [文件列表]
sh4 (非官方移植版) 182.0 kB429.0 kB [文件列表]
sparc64 (非官方移植版) 159.4 kB477.0 kB [文件列表]
x32 (非官方移植版) 170.1 kB453.0 kB [文件列表]