[ buster ]
[ 源代码： tophat ]
软件包：tophat（2.1.1+dfsg1-2 以及其他的）
tophat 的相关链接
Debian 的资源：
下载源码包 tophat：
维护小组：
- Debian Med Packaging Team (QA 页面, 邮件存档)
- Carlos Borroto (QA 页面)
- Alexandre Mestiashvili (QA 页面)
- Andreas Tille (QA 页面)
外部的资源：
- 主页 [ccb.jhu.edu]
相似软件包：
fast splice junction mapper for RNA-Seq reads
TopHat aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons. TopHat is a collaborative effort between the University of Maryland Center for Bioinformatics and Computational Biology and the University of California, Berkeley Departments of Mathematics and Molecular and Cell Biology.
其他与 tophat 有关的软件包
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- dep: libboost-system1.67.0
- Operating system (e.g. diagnostics support) library
-
- dep: libboost-thread1.67.0
- portable C++ multi-threading
-
- dep: libc6 (>= 2.15) [amd64]
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
- dep: libc6 (>= 2.17) [arm64]
-
- dep: libgcc1 (>= 1:3.0)
- GCC 支持库
-
- dep: libstdc++6 (>= 5.2)
- GNU 标准 C++ 库，第3版
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- dep: python
- 交互式高级面向对象语言（Python2 版本）
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- dep: samtools (>= 1.5)
- processing sequence alignments in SAM, BAM and CRAM formats
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- dep: zlib1g (>= 1:1.2.3.3)
- 压缩库 - 运行时
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- sug: cufflinks
- Transcript assembly, differential expression and regulation for RNA-Seq