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[ 源代码: samblaster  ]

软件包:samblaster(0.1.24-2)

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marks duplicates, extracts discordant/split reads

Current "next-generation" sequencing technologies cannot tell what exact sequence they will be reading. They take what is available. And if some sequences are read very often, then this needs some extra biomedical thinking. The genome could for instance be duplicated.

samblaster is a fast and flexible program for marking duplicates in read-id grouped paired-end SAM files. It can also optionally output discordant read pairs and/or split read mappings to separate SAM files, and/or unmapped/clipped reads to a separate FASTQ file. When marking duplicates, samblaster will require approximately 20MB of memory per 1M read pairs.

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下载可用于所有硬件架构的
硬件架构 软件包大小 安装后大小 文件
amd64 22.8 kB57.0 kB [文件列表]
arm64 21.9 kB57.0 kB [文件列表]
armel 20.7 kB53.0 kB [文件列表]
armhf 20.7 kB45.0 kB [文件列表]
i386 23.7 kB57.0 kB [文件列表]
mips 23.6 kB63.0 kB [文件列表]
mips64el 24.1 kB68.0 kB [文件列表]
mipsel 23.8 kB63.0 kB [文件列表]
ppc64el 26.3 kB86.0 kB [文件列表]
s390x 21.5 kB57.0 kB [文件列表]