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[ 源代码: pscan-tfbs  ]

软件包:pscan-tfbs(1.2.2-3)

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search for transcription factor binding sites

Pscan finds Over-represented Transcription Factor Binding Site Motifs in Sequences from Co-Regulated or Co-Expressed Genes.

Pscan is a software tool that scans a set of sequences (e.g. promoters) from co-regulated or co-expressed genes with motifs describing the binding specificity of known transcription factors and assesses which motifs are significantly over- or under-represented, providing thus hints on which transcription factors could be common regulators of the genes studied, together with the location of their candidate binding sites in the sequences. Pscan does not resort to comparisons with orthologous sequences and experimental results show that it compares favorably to other tools for the same task in terms of false positive predictions and computation time. The website is free and open to all users and there is no login requirement.

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下载可用于所有硬件架构的
硬件架构 软件包大小 安装后大小 文件
amd64 67.3 kB186.0 kB [文件列表]
arm64 60.3 kB157.0 kB [文件列表]
armel 58.4 kB157.0 kB [文件列表]
armhf 59.2 kB121.0 kB [文件列表]
i386 72.7 kB196.0 kB [文件列表]
mips 62.6 kB192.0 kB [文件列表]
mips64el 63.0 kB190.0 kB [文件列表]
mipsel 63.6 kB192.0 kB [文件列表]
ppc64el 66.5 kB225.0 kB [文件列表]
s390x 61.1 kB182.0 kB [文件列表]