全部搜索项
stretch  ] [  buster  ] [  bullseye  ] [  sid  ]
[ 源代码: prottest  ]

软件包:prottest(3.4.2+dfsg-3)

prottest 的相关链接

Screenshot

Debian 的资源:

下载源码包 prottest

维护小组:

外部的资源:

相似软件包:

selection of best-fit models of protein evolution

PROTTEST (ModelTest's relative) is a program for selecting the model of protein evolution that best fits a given set of sequences (alignment). This java program is based on the Phyml program (for maximum likelihood calculations and optimization of parameters) and uses the PAL library as well. Models included are empirical substitution matrices (such as WAG, LG, mtREV, Dayhoff, DCMut, JTT, VT, Blosum62, CpREV, RtREV, MtMam, MtArt, HIVb, and HIVw) that indicate relative rates of amino acid replacement, and specific improvements (+I:invariable sites, +G: rate heterogeneity among sites, +F: observed amino acid frequencies) to account for the evolutionary constraints impossed by conservation of protein structure and function. ProtTest uses the Akaike Information Criterion (AIC) and other statistics (AICc and BIC) to find which of the candidate models best fits the data at hand.

其他与 prottest 有关的软件包

  • 依赖
  • 推荐
  • 建议
  • 增强

下载 prottest

下载可用于所有硬件架构的
硬件架构 软件包大小 安装后大小 文件
all 337.3 kB493.0 kB [文件列表]