全部搜索项
jessie  ] [  stretch  ] [  buster  ] [  bullseye  ] [  sid  ]
[ 源代码: prank  ]

软件包:prank(0.0.170427+dfsg-2)

prank 的相关链接

Screenshot

Debian 的资源:

下载源码包 prank

维护小组:

外部的资源:

相似软件包:

Probabilistic Alignment Kit for DNA, codon and amino-acid sequences

PRANK is a probabilistic multiple alignment program for DNA, codon and amino-acid sequences. It's based on a novel algorithm that treats insertions correctly and avoids over-estimation of the number of deletion events. In addition, PRANK borrows ideas from maximum likelihood methods used in phylogenetics and correctly takes into account the evolutionary distances between sequences. Lastly, PRANK allows for defining a potential structure for sequences to be aligned and then, simultaneously with the alignment, predicts the locations of structural units in the sequences.

PRANK is a command-line program for UNIX-style environments but the same sequence alignment engine is implemented in the graphical program PRANKSTER. In addition to providing a user-friendly interface to those not familiar with Unix systems, PRANKSTER is an alignment browser for alignments saved in the HSAML format. The novel format allows for storing all the information generated by the aligner and the alignment browser is a convenient way to analyse and manipulate the data.

PRANK aims at an evolutionarily correct sequence alignment and often the result looks different from ones generated with other alignment methods. There are, however, cases where the different look is caused by violations of the method's assumptions. To understand why things may go wrong and how to avoid that, read this explanation of differences between PRANK and traditional progressive alignment methods.

其他与 prank 有关的软件包

  • 依赖
  • 推荐
  • 建议
  • 增强

下载 prank

下载可用于所有硬件架构的
硬件架构 软件包大小 安装后大小 文件
amd64 366.6 kB1,081.0 kB [文件列表]
arm64 316.5 kB993.0 kB [文件列表]
armel 315.8 kB1,004.0 kB [文件列表]
armhf 322.5 kB712.0 kB [文件列表]
i386 382.7 kB1,188.0 kB [文件列表]
mips 307.2 kB1,285.0 kB [文件列表]
mips64el 308.7 kB1,256.0 kB [文件列表]
mipsel 313.6 kB1,285.0 kB [文件列表]
ppc64el 342.6 kB1,245.0 kB [文件列表]
s390x 322.7 kB1,109.0 kB [文件列表]