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[ 源代码: jellyfish  ]

软件包:jellyfish(2.2.10-2)

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count k-mers in DNA sequences

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

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下载可用于所有硬件架构的
硬件架构 软件包大小 安装后大小 文件
amd64 352.6 kB608.0 kB [文件列表]
arm64 336.4 kB571.0 kB [文件列表]
mips64el 340.3 kB688.0 kB [文件列表]
ppc64el 352.3 kB704.0 kB [文件列表]