软件包：hhsuite（3.0~beta3+dfsg-3）

[ 源代码： hhsuite  ]

sensitive protein sequence searching based on HMM-HMM alignment

HH-suite is an open-source software package for sensitive protein sequence searching based on the pairwise alignment of hidden Markov models (HMMs).

This package contains HHsearch and HHblits among other programs and utilities.

HHsearch takes as input a multiple sequence alignment (MSA) or profile HMM and searches a database of HMMs (e.g. PDB, Pfam, or InterPro) for homologous proteins. HHsearch is often used for protein structure prediction to detect homologous templates and to build highly accurate query-template pairwise alignments for homology modeling.

HHblits can build high-quality MSAs starting from single sequences or from MSAs. It transforms these into a query HMM and, using an iterative search strategy, adds significantly similar sequences from the previous search to the updated query HMM for the next search iteration. Compared to PSI-BLAST, HHblits is faster, up to twice as sensitive and produces more accurate alignments.

其他与 hhsuite 有关的软件包

• dep: ffindex (>= 0.9.9.8)

  simple index/database for huge amounts of small files

• dep: hhsuite-data (= 3.0~beta3+dfsg-3)

  sensitive protein sequence searching based on HMM-HMM alignment (data)

• dep: libc6 (>= 2.27)

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

• dep: libffindex0 (>= 0.9.9.9)

  library for simple index/database for huge amounts of small files

• dep: libgcc1 (>= 1:3.0)

  GCC 支持库

• dep: libgomp1 (>= 4.9)

  GCC OpenMP（GOMP）支持库

• dep: libstdc++6 (>= 5.2)

  GNU 标准 C++ 库，第3版

• dep: python

  交互式高级面向对象语言（Python2 版本）

下载 hhsuite

下载可用于所有硬件架构的

硬件架构	软件包大小	安装后大小	文件
amd64	1,007.9 kB	7,803.0 kB	[文件列表]