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[ 源代码: discosnp  ]

软件包:discosnp(2.3.0-2)

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discovering Single Nucleotide Polymorphism from raw set(s) of reads

Software discoSnp is designed for discovering Single Nucleotide Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation Sequencers (NGS).

Note that number of input read sets is not constrained, it can be one, two, or more. Note also that no other data as reference genome or annotations are needed.

The software is composed by two modules. First module, kissnp2, detects SNPs from read sets. A second module, kissreads, enhance the kissnp2 results by computing per read set and for each found SNP:

 1) its mean read coverage
 2) the (phred) quality of reads generating the polymorphism.

This program is superseded by DiscoSnp++.

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硬件架构 软件包大小 安装后大小 文件
amd64 774.4 kB1,604.0 kB [文件列表]
arm64 762.9 kB1,584.0 kB [文件列表]
i386 781.0 kB1,544.0 kB [文件列表]
mips64el 761.0 kB1,707.0 kB [文件列表]
ppc64el 779.6 kB1,796.0 kB [文件列表]
s390x 758.4 kB1,616.0 kB [文件列表]