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[ 源代码: crac  ]

软件包:crac(2.5.0+dfsg-3)

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integrated RNA-Seq read analysis

CRAC is a tool to analyze High Throughput Sequencing (HTS) data in comparison to a reference genome. It is intended for transcriptomic and genomic sequencing reads. More precisely, with transcriptomic reads as input, it predicts point mutations, indels, splice junction, and chimeric RNAs (ie, non colinear splice junctions). CRAC can also output positions and nature of sequence error that it detects in the reads. CRAC uses a genome index. This index must be computed before running the read analysis. For this sake, use the command "crac-index" on your genome files. You can then process the reads using the command crac. See the man page of CRAC (help file) by typing "man crac". CRAC requires large amount of main memory on your computer. For processing against the Human genome, say 50 million reads of 100 nucleotide each, CRAC requires about 40 gigabytes of main memory. Check whether the system of your computing server is equipped with sufficient amount of memory before launching an analysis.

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下载可用于所有硬件架构的
硬件架构 软件包大小 安装后大小 文件
amd64 309.3 kB1,008.0 kB [文件列表]
arm64 292.7 kB948.0 kB [文件列表]
mips64el 328.9 kB1,197.0 kB [文件列表]
ppc64el 340.2 kB1,160.0 kB [文件列表]