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[ 源代码: kmer  ]

软件包:atac(0~20150903+r2013-6)

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genome assembly-to-assembly comparison

atac computes a one-to-one pairwise alignment of large DNA sequences. It first finds the unique k-mers in each sequence, chains them to larger blocks, and fills in spaces between blocks. It was written primarily to transfer annotations between different assemblies of the human genome.

The output is a set of ungapped 'matches', and a set of gapped 'runs' formed from the matches. Each match or run associates one sequence with the other sequence. The association is 'unique', in that there is no other (sizeable) associations for either sequence. Thus, large repeats and duplications are not present in the output - they appear as unmapped regions.

Though the output is always pairwise, atac can cache intermediate results to speed a comparisons of multiple sequences.

This package is part of the Kmer suite.

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下载可用于所有硬件架构的
硬件架构 软件包大小 安装后大小 文件
amd64 379.3 kB2,763.0 kB [文件列表]
arm64 362.8 kB2,547.0 kB [文件列表]
armel 359.2 kB2,533.0 kB [文件列表]
armhf 361.8 kB2,145.0 kB [文件列表]
i386 403.4 kB3,001.0 kB [文件列表]
mips 442.0 kB3,139.0 kB [文件列表]
mips64el 401.9 kB3,117.0 kB [文件列表]
mipsel 452.6 kB3,139.0 kB [文件列表]
ppc64el 429.0 kB3,867.0 kB [文件列表]
s390x 348.2 kB2,815.0 kB [文件列表]