软件包：chromhmm（1.18+dfsg-1）
Chromatin state discovery and characterization
ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modifications to discover de novo the major re-occuring combinatorial and spatial patterns of marks. ChromHMM is based on a multivariate Hidden Markov Model that explicitly models the presence or absence of each chromatin mark. The resulting model can then be used to systematically annotate a genome in one or more cell types. By automatically computing state enrichments for large-scale functional and annotation datasets ChromHMM facilitates the biological characterization of each state. ChromHMM also produces files with genome-wide maps of chromatin state annotations that can be directly visualized in a genome browser.
其他与 chromhmm 有关的软件包
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- dep: default-jre
- Standard Java or Java compatible Runtime
- 或者 java7-runtime
- 本虚包由这些包填实： default-jre, openjdk-11-jre
- 或者 java8-runtime
- 本虚包由这些包填实： default-jre, openjdk-11-jre
- 或者 java9-runtime
- 本虚包由这些包填实： default-jre, openjdk-11-jre
- 或者 java10-runtime
- 本虚包由这些包填实： default-jre, openjdk-11-jre
- 或者 java11-runtime
- 本虚包由这些包填实： default-jre, openjdk-11-jre
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- dep: jarwrapper (>= 0.5)
- Run executable Java .jar files
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- dep: libbatik-java
- xml.apache.org SVG Library
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- dep: libhtsjdk-java
- Java API for high-throughput sequencing data (HTS) formats
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- dep: libjheatchart-java
- Heat map charting library for Java