[ 源代码： sprai ]
软件包：sprai（0.9.9.23+dfsg-2）
single-pass sequencing read accuracy improver
Sprai is a tool to correct sequencing errors in single-pass reads for de novo assembly. It is originally designed for correcting sequencing errors in single-molecule DNA sequencing reads, especially in Continuous Long Reads (CLRs) generated by PacBio RS sequencers. The goal of Sprai is not maximizing the accuracy of error-corrected reads. Instead, Sprai aims at maximizing the continuity (i.e., N50 contig length) of assembled contigs after error correction.
其他与 sprai 有关的软件包
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- dep: libc6 (>= 2.7)
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
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- dep: ncbi-blast+ (>= 2.2.27)
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- dep: perl
- 拉里 沃尔的实用报表提取语言(Perl)
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- dep: time
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- sug: make
- utility for directing compilation
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- sug: pbalign
- map Pacific Biosciences reads to reference DNA sequences
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- sug: pbgenomicconsensus
- Pacific Biosciences variant and consensus caller
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- sug: pbh5tools
- tools for manipulating Pacific Biosciences HDF5 files