软件包：ssake（4.0-3）

[ 源代码： ssake  ]

genomics application for assembling millions of very short DNA sequences

The Short Sequence Assembly by K-mer search and 3′ read Extension (SSAKE) is a genomics application for aggressively assembling millions of short nucleotide sequences by progressively searching for perfect 3′-most k-mers using a DNA prefix tree. SSAKE is designed to help leverage the information from short sequences reads by stringently clustering them into contigs that can be used to characterize novel sequencing targets.

标签: 领域: 生物学, 实做语言: Perl, implemented-in::python, interface::commandline, 用户接口: Command Shell, 角色: role::program, scope::utility, Purpose: Analysing

其他与 ssake 有关的软件包

• dep: libperl4-corelibs-perl

  libraries historically supplied with Perl 4

• dep: perl

  拉里 沃尔的实用报表提取语言(Perl)

• dep: python3

  交互式高级面向对象语言（默认 python3 版本）

• sug: ssake-examples

  example data for SSAKE, a genomic assembler of short reads

下载 ssake

下载可用于所有硬件架构的

硬件架构	软件包大小	安装后大小	文件
all	48.6 kB	214.0 kB	[文件列表]