软件包：stringtie（2.1.4+ds-4）

[ 源代码： stringtie  ]

assemble short RNAseq reads to transcripts

The abundance of transcripts in a human tissue sample can be determined by RNA sequencing. The exact sequence sampled may be random, depending on the technology used. And it may be short, i.e. shorter than the transcript. At some point, many shorter reads need to be assembled to the model the complete transcripts.

StringTie knows how to assemble of RNA-Seq into potential transcripts without the need of a reference genome and provides a quantification also of the splice variants.

其他与 stringtie 有关的软件包

• dep: libc6 (>= 2.7)

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

• dep: libgcc-s1 (>= 4.2)

  GCC 支持库

• dep: libhts3 (>= 1.10)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 4.1.1)

  GNU 标准 C++ 库，第3版

• dep: zlib1g (>= 1:1.2.3.3)

  压缩库 - 运行时

• rec: stringtie-examples

  软件包暂时不可用

• sug: cufflinks

  Transcript assembly, differential expression and regulation for RNA-Seq

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硬件架构	软件包大小	安装后大小	文件
mipsel	350.4 kB	1,177.0 kB	[文件列表]