软件包：idba-extra（1.1.3-7）
iterative De Bruijn Graph short read assemblers (extra tools)
IDBA stands for iterative de Bruijn graph assembler. In computational sequence biology, an assembler solves the puzzle coming from large sequencing machines that feature many gigabytes of short reads from a large genome.
This package provides several flavours of the IDBA assembler, as they all share the same source tree but serve different purposes and evolved over time.
IDBA is the basic iterative de Bruijn graph assembler for second-generation sequencing reads. IDBA-UD, an extension of IDBA, is designed to utilize paired-end reads to assemble low-depth regions and use progressive depth on contigs to reduce errors in high-depth regions. It is a generic purpose assembler and especially good for single-cell and metagenomic sequencing data. IDBA-Hybrid is another update version of IDBA-UD, which can make use of a similar reference genome to improve assembly result. IDBA-Tran is an iterative de Bruijn graph assembler for RNA-Seq data.
This package ships extra tools for using idba in specific situations.
其他与 idba-extra 有关的软件包
|
|
|
|
-
- dep: idba
- iterative De Bruijn Graph short read assemblers
-
- dep: libatomic1 (>= 4.8)
- 提供 __atomic 内置函数的支持库
-
- dep: libc6 (>= 2.29)
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
-
- dep: libgcc-s1 (>= 4.2)
- GCC 支持库
-
- dep: libgomp1 (>= 6)
- GCC OpenMP（GOMP）支持库
-
- dep: libstdc++6 (>= 5.2)
- GNU 标准 C++ 库，第3版
-
- dep: python3
- 交互式高级面向对象语言（默认 python3 版本）