软件包：exonerate（2.4.0-5）

[ 源代码： exonerate  ]

generic tool for pairwise sequence comparison

Exonerate allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics. Much of the functionality of the Wise dynamic programming suite was reimplemented in C for better efficiency. Exonerate is an intrinsic component of the building of the Ensembl genome databases, providing similarity scores between RNA and DNA sequences and thus determining splice variants and coding sequences in general.

An In-silico PCR Experiment Simulation System (see the ipcress man page) is packaged with exonerate.

This package also comes with a selection of utilities for performing simple manipulations quickly on fasta files beyond 2Gb

标签: 领域: 生物学, 生物信息学, 实做语言: implemented-in::c, interface::commandline, 角色: 程序, 范围: 实用程序, Purpose: use::TODO, use::searching, 支持的格式: 需要一个额外的标签, works-with-format::plaintext, works-with::TODO

其他与 exonerate 有关的软件包

• dep: libc6 (>= 2.29)

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

• dep: libglib2.0-0 (>= 2.24.0)

  C 例程的 GLib 软件库

• sug: wise

  comparison of biopolymers, like DNA and protein sequences

• enh: bioperl-run

  BioPerl wrappers: scripts

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硬件架构	软件包大小	安装后大小	文件
mipsel	1,403.0 kB	8,592.0 kB	[文件列表]