软件包：cufflinks（2.2.1+dfsg.1-8 以及其他的） [non-free]

[ 源代码： cufflinks  ]

Transcript assembly, differential expression and regulation for RNA-Seq

Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one.

标签: 生物学: 核酸, 领域: 生物学, field::biology:bioinformatics, implemented-in::c++, 角色: 程序, 处理: Biological Sequence

其他与 cufflinks 有关的软件包

• dep: libboost-serialization1.74.0 (>= 1.74.0)

  serialization library for C++

• dep: libboost-thread1.74.0 (>= 1.74.0)

  portable C++ multi-threading

• dep: libc6 (>= 2.29)

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

• dep: libgcc-s1 (>= 4.2)

  GCC 支持库

• dep: libstdc++6 (>= 5.2)

  GNU 标准 C++ 库，第3版

• dep: python3

  交互式高级面向对象语言（默认 python3 版本）

• dep: zlib1g (>= 1:1.2.3.3)

  压缩库 - 运行时

• rec: gffread

  GFF/GTF format conversions, region filtering, FASTA sequence extraction

• enh: tophat

  软件包暂时不可用

下载 cufflinks

下载可用于所有硬件架构的

硬件架构	版本	软件包大小	安装后大小	文件
mipsel	2.2.1+dfsg.1-8+b1	1,500.6 kB	13,369.0 kB	[文件列表]