软件包：dotter（4.44.1+dfsg-6 以及其他的）

dotter 的相关链接

Debian 的资源：

下载源码包 seqtools：

维护小组：

外部的资源：

主页 [www.sanger.ac.uk]

相似软件包：

detailed comparison of two genomic sequences

Dotter is a graphical dot-matrix program for detailed comparison of two sequences.

 * Every residue in one sequence is compared to every residue in the
   other, and a matrix of scores is calculated.
 * One sequence is plotted on the x-axis and the other on the y-axis.
 * Noise is filtered out so that alignments appear as diagonal lines.
 * Pairwise scores are averaged over a sliding window to make the score
   matrix more intelligible.
 * The averaged score matrix forms a three-dimensional landscape,
   with the two sequences in two dimensions and the height of the
   peaks in the third. This landscape is projected onto two
   dimensions using a grey-scale image - the darker grey of a peak,
   the higher the score is.
 * The contrast and threshold of the grey-scale image can be adjusted
   interactively, without having to recalculate the score matrix.
 * An Alignment Tool is provided to examine the sequence alignment that
   the grey-scale image represents.
 * Known high-scoring pairs can be loaded from a GFF file and overlaid
   onto the plot.
 * Gene models can be loaded from GFF and displayed alongside the
   relevant axis.
 * Compare a sequence against itself to find internal repeats.
 * Find overlaps between multiple sequences by making a dot-plot of all
   sequences versus themselves.
 * Run Dotter in batch mode to create large, time-consuming dot-plots as
   a background process.

标签: 界面工具箱: GTK

其他与 dotter 有关的软件包

依赖

推荐

建议

增强

dep: libc6 (>= 2.29)

GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
dep: libcairo2 (>= 1.2.4)

Cairo 2D vector graphics library
dep: libcurl4 (>= 7.16.2)

简单易用的客户端 URL 传输软件库（OpenSSL 变种）
dep: libgbtools0 (>= 4.44.1+dfsg)

library for visualising sequence alignments
dep: libgcc-s1 (>= 3.0)

GCC 支持库
dep: libglib2.0-0 (>= 2.22.0)

C 例程的 GLib 软件库
dep: libgtk2.0-0 (>= 2.12.0)

GTK graphical user interface library - old version
dep: libpango-1.0-0 (>= 1.14.0)

Layout and rendering of internationalized text
dep: libpangocairo-1.0-0 (>= 1.14.0)

Layout and rendering of internationalized text
dep: libstdc++6 (>= 5.2)

GNU 标准 C++ 库，第3版

下载 dotter

下载可用于所有硬件架构的
硬件架构	版本	软件包大小	安装后大小	文件
mipsel	4.44.1+dfsg-6+b1	600.3 kB	872.0 kB	[文件列表]