[ 源代码： shovill ]
软件包：shovill（1.1.0-9）
Assemble bacterial isolate genomes from Illumina paired-end reads
Shovill is a pipeline which uses SPAdes at its core, but alters the steps before and after the primary assembly step to get similar results in less time. Shovill also supports other assemblers like SKESA, Velvet and Megahit, so you can take advantage of the pre- and post-processing the Shovill provides with those too.
其他与 shovill 有关的软件包
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- dep: bwa
- Burrows-Wheeler Aligner
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- dep: flash
- Fast Length Adjustment of SHort reads
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- dep: kmc
- count kmers in genomic sequences
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- dep: lighter
- fast and memory-efficient sequencing error corrector
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- dep: megahit
- ultra-fast and memory-efficient meta-genome assembler
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- dep: perl
- 拉里 沃尔的实用报表提取语言(Perl)
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- dep: pigz
- Parallel Implementation of GZip
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- dep: pilon
- automated genome assembly improvement and variant detection tool
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- dep: samclip
- filter SAM file for soft and hard clipped alignments
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- dep: seqtk
- Fast and lightweight tool for processing sequences in the FASTA or FASTQ format
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- dep: skesa
- strategic Kmer extension for scrupulous assemblies
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- dep: spades
- genome assembler for single-cell and isolates data sets
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- dep: trimmomatic
- flexible read trimming tool for Illumina NGS data
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- dep: velvet
- Nucleic acid sequence assembler for very short reads