全部搜索项
[  buster  ] [  bullseye  ] [  bookworm  ] [  trixie  ] [  sid  ]
[ 源代码： python-treetime  ]

软件包：python3-treetime（0.9.4-1）

python3-treetime 的相关链接

Screenshot

Debian 的资源：

下载源码包 python-treetime：

维护小组：

外部的资源：

相似软件包：

inference of time stamped phylogenies and ancestral reconstruction (Python 3)

TreeTime provides routines for ancestral sequence reconstruction and the maximum likelihoo inference of molecular-clock phylogenies, i.e., a tree where all branches are scaled such that the locations of terminal nodes correspond to their sampling times and internal nodes are placed at the most likely time of divergence.

TreeTime aims at striking a compromise between sophisticated probabilistic models of evolution and fast heuristics. It implements GTR models of ancestral inference and branch length optimization, but takes the tree topology as given. To optimize the likelihood of time-scaled phylogenies, treetime uses an iterative approach that first infers ancestral sequences given the branch length of the tree, then optimizes the positions of unconstraine d nodes on the time axis, and then repeats this cycle. The only topology optimization are (optional) resolution of polytomies in a way that is most (approximately) consistent with the sampling time constraints on the tree. The package is designed to be used as a stand-alone tool or as a library used in larger phylogenetic analysis workflows.

Features 

 * ancestral sequence reconstruction (marginal and joint maximum
   likelihood)
 * molecular clock tree inference (marginal and joint maximum
   likelihood)
 * inference of GTR models
 * rerooting to obtain best root-to-tip regression
 * auto-correlated relaxed molecular clock (with normal prior)

This package provides the Python 3 module.

其他与 python3-treetime 有关的软件包

  • 依赖
  • 推荐
  • 建议
  • 增强

下载 python3-treetime

下载可用于所有硬件架构的
硬件架构 软件包大小 安装后大小 文件
all 899.9 kB1,707.0 kB [文件列表]