[ 源代码： python-pauvre ]
软件包：python3-pauvre（0.2.3-2）
QC and genome browser plotting Oxford Nanopore and PacBio long reads
Pauvre is a plotting package designed for nanopore and PacBio long reads.
This package currently hosts four scripts for plotting and/or printing stats.
pauvre marginplot
Takes a fastq file as input and outputs a marginal histogram with a
heatmap.
pauvre stats
Takes a fastq file as input and prints out a table of stats, including
how many basepairs/reads there are for a length/mean quality cutoff.
This is also automagically called when using pauvre marginplot
pauvre redwood
Method of representing circular genomes. A redwood plot contains long
reads as "rings" on the inside, a gene annotation "cambrium/phloem",
and a RNAseq "bark". The input is .bam files for the long reads and
RNAseq data, and a .gff file for the annotation.
pauvre synteny
Makes a synteny plot of circular genomes. Finds the most parsimonius
rotation to display the synteny of all the input genomes with the
fewest crossings-over. Input is one .gff file per circular genome
and one directory of gene alignments.
其他与 python3-pauvre 有关的软件包
|
|
|
|
-
- dep: python3
- 交互式高级面向对象语言（默认 python3 版本）
-
- dep: python3-biopython
- Python3 library for bioinformatics
-
- dep: python3-matplotlib
- Python based plotting system in a style similar to Matlab (Python 3)
-
- dep: python3-numpy
- Fast array facility to the Python 3 language
-
- dep: python3-pandas
- data structures for "relational" or "labeled" data
-
- dep: python3-scipy
- scientific tools for Python 3
-
- dep: python3-sklearn
- Python modules for machine learning and data mining - Python 3
-
- dep: python3-tk
- Tkinter - Writing Tk applications with Python 3.x