软件包：r-bioc-isoformswitchanalyzer（1.20.0+ds-1）

[ 源代码： r-bioc-isoformswitchanalyzer  ]

Identify, Annotate and Visualize Alternative Splicing and

Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data. Analysis of alternative splicing and isoform switches with predicted functional consequences (e.g. gain/loss of protein domains etc.) from quantification of all types of RNASeq by tools such as Kallisto, Salmon, StringTie, Cufflinks/Cuffdiff etc.

其他与 r-bioc-isoformswitchanalyzer 有关的软件包

• dep: r-api-4.0

  本虚包由这些包填实： r-base-core

• dep: r-api-bioc-3.16

  本虚包由这些包填实： r-bioc-biocgenerics

• dep: r-base-core (>= 4.2.2.20221110-1)

  GNU R core of statistical computation and graphics system

• dep: r-bioc-biobase

  base functions for Bioconductor

• dep: r-bioc-biocgenerics

  generic functions for Bioconductor

• dep: r-bioc-biostrings (>= 2.50.0)

  GNU R string objects representing biological sequences

• dep: r-bioc-bsgenome

  BioConductor infrastructure for Biostrings-based genome data packages

• dep: r-bioc-dexseq

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• dep: r-bioc-drimseq

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• dep: r-bioc-edger

  Empirical analysis of digital gene expression data in R

• dep: r-bioc-genomeinfodb

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicranges

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• dep: r-bioc-iranges

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• dep: r-bioc-limma

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• dep: r-bioc-rtracklayer

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• dep: r-bioc-tximeta (>= 1.7.12)

  Transcript Quantification Import with Automatic Metadata

• dep: r-bioc-tximport (>= 1.7.1)

  transcript-level estimates for biological sequencing

• dep: r-bioc-xvector

  BioConductor representation and manpulation of external sequences

• dep: r-cran-dbi

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• dep: r-cran-dplyr

  GNU R grammar of data manipulation

• dep: r-cran-futile.logger

  logging utility for GNU R

• dep: r-cran-ggplot2

  implementation of the Grammar of Graphics

• dep: r-cran-gridextra

  GNU R package with extensions for the grid package

• dep: r-cran-magrittr

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• dep: r-cran-plyr

  tools for splitting, applying and combining data

• dep: r-cran-rcolorbrewer

  GNU R package providing suitable color palettes

• dep: r-cran-rcurl

  GNU R General network (HTTP/FTP/...) client interface

• dep: r-cran-readr

  GNU R package to read rectangular text data

• dep: r-cran-reshape2

  Flexibly reshape data: a reboot of the reshape package

• dep: r-cran-stringr

  Make it easier to work with strings

• dep: r-cran-tibble

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• dep: r-cran-venndiagram

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• sug: r-cran-knitr

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• sug: r-cran-rmarkdown

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下载 r-bioc-isoformswitchanalyzer

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硬件架构	软件包大小	安装后大小	文件
amd64	3,589.5 kB	4,202.0 kB	[文件列表]
arm64	3,589.6 kB	4,254.0 kB	[文件列表]
armel	3,589.6 kB	4,254.0 kB	[文件列表]
armhf	3,589.4 kB	4,254.0 kB	[文件列表]
i386	3,546.9 kB	4,159.0 kB	[文件列表]
mips64el	3,589.3 kB	4,254.0 kB	[文件列表]
mipsel	3,589.4 kB	4,254.0 kB	[文件列表]
ppc64el	3,589.8 kB	4,254.0 kB	[文件列表]
s390x	3,589.6 kB	4,194.0 kB	[文件列表]