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[ Source: tree-puzzle  ]

Package: tree-puzzle (5.2-7)

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Reconstruction of phylogenetic trees by maximum likelihood

TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Plain Text, Works with: Need an extra tag

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Architecture Package Size Installed Size Files
amd64 144.3 kB316.0 kB [list of files]
armel 150.2 kB335.0 kB [list of files]
armhf 131.9 kB255.0 kB [list of files]
i386 132.8 kB312.0 kB [list of files]
ia64 217.2 kB622.0 kB [list of files]
kfreebsd-amd64 144.1 kB277.0 kB [list of files]
kfreebsd-i386 132.7 kB273.0 kB [list of files]
powerpc 144.4 kB311.0 kB [list of files]
sparc 140.3 kB307.0 kB [list of files]