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[ Source: t-coffee  ]

Package: t-coffee (9.02.r1228-2)

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Multiple Sequence Alignment

T-Coffee is a multiple sequence alignment package. Given a set of sequences (Proteins or DNA), T-Coffee generates a multiple sequence alignment. Version 2.00 and higher can mix sequences and structures.

T-Coffee allows the combination of a collection of multiple/pairwise, global or local alignments into a single model. It also allows to estimate the level of consistency of each position within the new alignment with the rest of the alignments. See the pre-print for more information

T-Coffee has a special called M-Coffee that makes it possible to combine the output of many multiple sequence alignment packages. In its published version, it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and T-Coffee. A special version has been made for Debian, DM-Coffee, that uses only free software by replacing Clustal W by Kalign. Using the 8 Methods of M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite methods if you prefer.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Need an extra tag, works-with-format::plaintext, works-with::TODO

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Architecture Package Size Installed Size Files
amd64 828.5 kB1,924.0 kB [list of files]
armel 754.9 kB1,738.0 kB [list of files]
armhf 667.8 kB2,045.0 kB [list of files]
i386 789.5 kB1,965.0 kB [list of files]
ia64 1,245.0 kB3,651.0 kB [list of files]
kfreebsd-amd64 828.2 kB1,893.0 kB [list of files]
kfreebsd-i386 788.8 kB1,933.0 kB [list of files]
mips 784.5 kB1,995.0 kB [list of files]
mipsel 647.0 kB2,752.0 kB [list of files]
powerpc 810.3 kB1,886.0 kB [list of files]
s390 800.0 kB1,914.0 kB [list of files]
s390x 867.4 kB2,132.0 kB [list of files]
sparc 758.8 kB1,788.0 kB [list of files]