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[ Source: clustalx  ]

Package: clustalx (2.1+lgpl-2)

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Multiple alignment of nucleic acid and protein sequences (graphical interface)

This package offers a GUI interface for the Clustal multiple sequence alignment program. It provides an integrated environment for performing multiple sequence- and profile-alignments to analyse the results. The sequence alignment is displayed in a window on the screen. A versatile coloring scheme has been incorporated to highlight conserved features in the alignment. For professional presentations, one should use the texshade LaTeX package or boxshade.

The pull-down menus at the top of the window allow you to select all the options required for traditional multiple sequence and profile alignment. You can cut-and-paste sequences to change the order of the alignment; you can select a subset of sequences to be aligned; you can select a sub-range of the alignment to be realigned and inserted back into the original alignment.

An alignment quality analysis can be performed and low-scoring segments or exceptional residues can be highlighted.

Tags: Biology: Clustal/ALN, Nucleic Acids, biology::peptidic, field::biology, Field: Bioinformatics, Implemented in: implemented-in::c, interface::x11, Role: Program, Scope: Utility, Interface Toolkit: uitoolkit::motif, use::analysing, Purpose: Comparing, use::viewing, works-with-format::plaintext, Works with: Need an extra tag, X Window System: Application

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Architecture Package Size Installed Size Files
amd64 555.8 kB1,376.0 kB [list of files]
armel 518.8 kB1,211.0 kB [list of files]
armhf 476.4 kB955.0 kB [list of files]
i386 546.0 kB1,373.0 kB [list of files]
ia64 786.1 kB2,586.0 kB [list of files]
kfreebsd-amd64 555.7 kB1,317.0 kB [list of files]
kfreebsd-i386 545.6 kB1,313.0 kB [list of files]
mips 506.3 kB1,405.0 kB [list of files]
mipsel 507.5 kB1,405.0 kB [list of files]
powerpc 557.5 kB1,351.0 kB [list of files]
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sparc 544.6 kB1,337.0 kB [list of files]