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[ Source: abyss  ]

Package: abyss (1.3.4-3) [non-free]

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de novo, parallel, sequence assembler for short reads

ABySS is a de novo, parallel, sequence assembler that is designed for short reads. It may be used to assemble genome or transcriptome sequence data. Parallelization is achieved using MPI, OpenMP and pthread.

To cite your use of ABySS, please reference ABySS: A parallel assembler for short read sequence data. Simpson JT, Wong K, Jackman SD, Schein JE, Jones SJ, Birol I. Genome Research, 2009-June.

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Architecture Package Size Installed Size Files
amd64 1,711.5 kB3,824.0 kB [list of files]